Package org.ujmp.core.graphmatrix
Class DefaultGraphMatrix<N,E>
- java.lang.Object
-
- java.lang.Number
-
- org.ujmp.core.AbstractMatrix
-
- org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix<A>
-
- org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix<A>
-
- org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix2D<E>
-
- org.ujmp.core.graphmatrix.AbstractGraphMatrix<N,E>
-
- org.ujmp.core.graphmatrix.DefaultGraphMatrix<N,E>
-
- All Implemented Interfaces:
java.io.Serializable
,java.lang.Cloneable
,java.lang.Comparable<Matrix>
,HasMetaData
,BaseMatrix
,BooleanCalculations
,CanPerformCalculations
,DenseMatrix
,DenseMatrix2D
,DenseMatrixMultiD
,BasicDoubleCalculations
,DoubleCalculations
,BasicEntrywiseDoubleCalculations
,CreatorDoubleCalculations
,EntrywiseDoubleCalculations
,HyperbolicDoubleCalculations
,MiscEntrywiseDoubleCalculations
,RoundingDoubleCalculations
,TrigonometricDoubleCalculations
,DecompositionDoubleCalculations
,DiscretizeCalculations
,GeneralDoubleCalculations
,MiscGeneralDoubleCalculations
,MissingValueDoubleCalculations
,StatisticalDoubleCalculations
,BaseGenericMatrix<E>
,DenseGenericMatrix<E>
,DenseGenericMatrix2D<E>
,DenseGenericMatrixMultiD<E>
,GenericMatrix<E>
,GenericMatrix2D<E>
,GenericMatrixMultiD<E>
,SparseGenericMatrix<E>
,SparseGenericMatrix2D<E>
,SparseGenericMatrixMultiD<E>
,GraphMatrix<N,E>
,BaseMatrixProperties
,Clearable
,Conversions
,CoordinateFunctions
,CoreObject
,DistanceMeasures
,ExtendedMatrixProperties
,GettersAndSetters
,HasDescription
,HasGUIObject
,HasId
,HasLabel
,IntCalculations
,Matrix
,Matrix2D
,MatrixMultiD
,ObjectCalculations
,SparseMatrix
,SparseMatrix2D
,SparseMatrixMultiD
,StringCalculations
public class DefaultGraphMatrix<N,E> extends AbstractGraphMatrix<N,E>
- See Also:
- Serialized Form
-
-
Field Summary
Fields Modifier and Type Field Description private java.util.Map<java.lang.Long,java.util.List<java.lang.Long>>
children
private boolean
directed
private java.util.Map<Coordinates,E>
edges
private java.util.List<N>
nodes
private java.util.Map<java.lang.Long,java.util.List<java.lang.Long>>
parents
private static long
serialVersionUID
-
Fields inherited from class org.ujmp.core.AbstractMatrix
guiObject, size
-
Fields inherited from interface org.ujmp.core.BaseMatrix
ALL, COLUMN, LINK, NEW, NONE, ORIG, ROW, X, Y, Z
-
Fields inherited from interface org.ujmp.core.DenseMatrix
Factory
-
Fields inherited from interface org.ujmp.core.DenseMatrix2D
Factory
-
Fields inherited from interface org.ujmp.core.interfaces.HasDescription
DESCRIPTION
-
Fields inherited from interface org.ujmp.core.annotation.HasMetaData
DIMENSIONMETADATA
-
Fields inherited from interface org.ujmp.core.Matrix
chol, divideMatrix, divideScalar, eig, Factory, inv, lu, minusMatrix, minusScalar, mtimes, plusMatrix, plusScalar, qr, solve, svd, timesMatrix, timesScalar, transpose
-
Fields inherited from interface org.ujmp.core.SparseMatrix
Factory
-
Fields inherited from interface org.ujmp.core.SparseMatrix2D
Factory
-
-
Constructor Summary
Constructors Constructor Description DefaultGraphMatrix()
DefaultGraphMatrix(java.util.List<N> nodes)
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addNode(N o)
java.lang.Iterable<long[]>
availableCoordinates()
Returns an Iterator that only goes over the coordinates in the Matrix that are stored.void
clear()
int
getChildCount(long nodeIndex)
java.util.List<java.lang.Long>
getChildIndices(long index)
E
getEdge(long nodeIndex1, long nodeIndex2)
int
getEdgeCount()
java.util.Collection<E>
getEdgeList()
N
getNode(long index)
int
getNodeCount()
java.util.List<N>
getNodeList()
int
getParentCount(long nodeIndex)
java.util.List<java.lang.Long>
getParentIndices(long index)
ValueType
getValueType()
boolean
isDirected()
void
removeEdge(long nodeIndex1, long nodeIndex2)
void
removeEdge(E edge)
void
removeEdge(N node1, N node2)
void
removeNode(long node)
void
removeNode(N o)
void
setDirected(boolean directed)
void
setEdge(E edge, long nodeIndex1, long nodeIndex2)
void
setEdge(E edge, N node1, N node2)
void
setNode(N node, long index)
-
Methods inherited from class org.ujmp.core.graphmatrix.AbstractGraphMatrix
containsCoordinates, getChildCount, getChildIndices, getChildren, getChildren, getDegree, getDegree, getEdge, getEdgesToChildren, getEdgesToParents, getIndexOfNode, getObject, getObject, getParentCount, getParentIndices, getParents, getParents, getSize, getValueCount, isConnected, isConnected, setObject, setObject
-
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix2D
getDimensionCount, getObject, setObject
-
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix
isSparse
-
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix
getAsObject, setAsObject
-
Methods inherited from class org.ujmp.core.AbstractMatrix
abs, addMissing, allCoordinates, allValues, and, and, append, appendHorizontally, appendVertically, atimes, bigDecimalValue, bigIntegerValue, booleanValue, bootstrap, bootstrap, ceil, center, charValue, chebyshevDistanceTo, chol, clone, compareTo, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, convert, convertEncoding, corrcoef, cos, cosh, cosineSimilarity, cosineSimilarityTo, countMissing, cov, cumprod, cumsum, dateValue, delete, delete, delete, deleteColumns, deleteColumns, deleteColumnsWithMissingValues, deleteRows, deleteRows, deleteRowsWithMissingValues, det, diag, diff, discretize, discretize, discretizeToBoolean, discretizeToColumns, divide, divide, divide, divide, doubleValue, eig, eigSymm, eq, eq, equals, equalsAnnotation, equalsContent, euklideanDistance, euklideanDistanceTo, exp, exportTo, extractAnnotation, eye, fadeIn, fadeOut, fill, fireValueChanged, fireValueChanged, fireValueChanged, flipdim, floatValue, floor, ge, ge, getAbsoluteValueMean, getAbsoluteValueSum, getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsShort, getAsString, getColumnCount, getColumnForLabel, getColumnLabel, getColumnList, getCoordinatesOfMaximum, getCoordinatesOfMinimum, getCoreObjectId, getDescription, getDimensionLabel, getDimensionMetaData, getEuklideanValue, getFactory, getGUIObject, getId, getLabel, getLabelObject, getMaxValue, getMeanValue, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getMinValue, getPositionForLabel, getPreferredObject, getRMS, getRowCount, getRowForLabel, getRowLabel, getRowList, getSize, getStdValue, getValueSum, getZCount, ginv, grayScale, gt, gt, importFrom, impute, includeAnnotation, indexOfMax, indexOfMin, intValue, inv, invSPD, invSymm, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSPD, isSquare, isSymmetric, isTransient, le, le, log, log10, log2, logistic, longValue, lowerCase, lt, lt, lu, manhattenDistance, manhattenDistanceTo, max, mean, min, minkowskiDistance, minkowskiDistanceTo, minus, minus, minus, minus, mtimes, mtimes, mutualInf, nans, ne, ne, nonZeroCoordinates, norm1, norm2, normalize, normF, normInf, not, ones, or, or, pairedTTest, pdet, pinv, pinv, plus, plus, plus, plus, power, power, princomp, prod, qr, rand, randn, rank, removePunctuation, removeWords, replace, replaceMissingBy, replaceRegex, replaceRegex, reshape, round, save, save, select, select, select, selectColumns, selectColumns, selectedCoordinates, selectedCoordinates, selectRows, selectRows, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsShort, setAsString, setColumnLabel, setContent, setDescription, setDimensionLabel, setDimensionMetaData, setId, setLabel, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel, setSize, share, share, showGUI, shuffle, sign, sin, sinh, solve, solveSPD, solveSymm, sortrows, sqrt, squeeze, standardize, std, stem, stringValue, subMatrix, sum, svd, svd, swap, tan, tanh, tanh, tfIdf, times, times, times, times, toBigDecimalArray, toBigDecimalMatrix, toBigIntegerArray, toBigIntegerMatrix, toBooleanArray, toBooleanMatrix, toByteArray, toByteMatrix, toCharArray, toCharMatrix, toColumnVector, toDateArray, toDoubleArray, toDoubleMatrix, toFloatArray, toFloatMatrix, toHtml, toIntArray, toIntMatrix, toListMatrix, toLongArray, toLongMatrix, toMapMatrix, toObjectArray, toObjectMatrix, toRowVector, toSetMatrix, toShortArray, toShortMatrix, toString, toStringArray, toStringMatrix, trace, translate, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount, upperCase, var, xor, xor, zeros
-
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
-
Methods inherited from interface org.ujmp.core.BaseMatrix
getFactory
-
Methods inherited from interface org.ujmp.core.interfaces.BaseMatrixProperties
allValues, equals, equalsAnnotation, equalsContent, getColumnCount, getColumnList, getDimensionCount, getRowCount, getRowList, getSize, getZCount, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSquare, isSymmetric, isTransient, setSize, toString
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.basic.BasicDoubleCalculations
atimes, divide, divide, divide, divide, minus, minus, minus, minus, mtimes, mtimes, plus, plus, plus, plus, times, times, times, times
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.basic.BasicEntrywiseDoubleCalculations
abs, exp, log, log10, log2, logistic, power, power, sign, sqrt
-
Methods inherited from interface org.ujmp.core.booleanmatrix.calculation.BooleanCalculations
and, and, eq, eq, ge, ge, gt, gt, le, le, lt, lt, ne, ne, not, or, or, xor, xor
-
Methods inherited from interface org.ujmp.core.interfaces.Conversions
toBigDecimalMatrix, toBigIntegerMatrix, toBooleanMatrix, toByteMatrix, toCharMatrix, toDoubleMatrix, toFloatMatrix, toIntMatrix, toListMatrix, toLongMatrix, toMapMatrix, toObjectMatrix, toSetMatrix, toShortMatrix, toStringMatrix
-
Methods inherited from interface org.ujmp.core.interfaces.CoordinateFunctions
allCoordinates, getCoordinatesOfMaximum, getCoordinatesOfMinimum, nonZeroCoordinates, selectedCoordinates, selectedCoordinates
-
Methods inherited from interface org.ujmp.core.interfaces.CoreObject
getCoreObjectId
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.creators.CreatorDoubleCalculations
eye, nans, ones, rand, randn, zeros
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.decomposition.DecompositionDoubleCalculations
chol, eig, eigSymm, ginv, inv, invSPD, invSymm, lu, pinv, pinv, princomp, qr, solve, solveSPD, solveSymm, svd, svd
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.discretize.DiscretizeCalculations
discretize, discretize, discretizeToBoolean, discretizeToColumns
-
Methods inherited from interface org.ujmp.core.interfaces.DistanceMeasures
chebyshevDistanceTo, cosineSimilarity, cosineSimilarityTo, euklideanDistance, euklideanDistanceTo, manhattenDistance, manhattenDistanceTo, minkowskiDistance, minkowskiDistanceTo
-
Methods inherited from interface org.ujmp.core.interfaces.ExtendedMatrixProperties
bigDecimalValue, bigIntegerValue, booleanValue, byteValue, charValue, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, dateValue, det, doubleValue, floatValue, getAbsoluteValueMean, getAbsoluteValueSum, getEuklideanValue, getMaxValue, getMeanValue, getMinValue, getRMS, getStdValue, getValueSum, intValue, isSPD, longValue, norm1, norm2, normF, normInf, pdet, rank, setContent, shortValue, stringValue, trace
-
Methods inherited from interface org.ujmp.core.interfaces.GettersAndSetters
getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsObject, getAsShort, getAsString, getPreferredObject, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsObject, setAsShort, setAsString, toBigDecimalArray, toBigIntegerArray, toBooleanArray, toByteArray, toCharArray, toDateArray, toDoubleArray, toFloatArray, toIntArray, toLongArray, toObjectArray, toShortArray, toStringArray
-
Methods inherited from interface org.ujmp.core.interfaces.HasDescription
getDescription, setDescription
-
Methods inherited from interface org.ujmp.core.interfaces.HasGUIObject
getGUIObject, showGUI
-
Methods inherited from interface org.ujmp.core.interfaces.HasLabel
getLabel, getLabelObject, setLabel
-
Methods inherited from interface org.ujmp.core.annotation.HasMetaData
getColumnForLabel, getColumnLabel, getDimensionLabel, getDimensionMetaData, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getPositionForLabel, getRowForLabel, getRowLabel, setColumnLabel, setDimensionLabel, setDimensionMetaData, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.hyperbolic.HyperbolicDoubleCalculations
cosh, sinh, tanh, tanh
-
Methods inherited from interface org.ujmp.core.Matrix
clone, exportTo, fireValueChanged, fireValueChanged, fireValueChanged, importFrom, save, save, share, share, toHtml
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.misc.MiscEntrywiseDoubleCalculations
grayScale
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.misc.MiscGeneralDoubleCalculations
append, appendHorizontally, appendVertically, center, fadeIn, fadeOut, normalize, replaceMissingBy, standardize
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.missingvalues.MissingValueDoubleCalculations
addMissing, countMissing, deleteColumnsWithMissingValues, deleteRowsWithMissingValues, impute
-
Methods inherited from interface org.ujmp.core.objectmatrix.calculation.ObjectCalculations
bootstrap, bootstrap, convert, delete, delete, delete, deleteColumns, deleteColumns, deleteRows, deleteRows, diag, extractAnnotation, fill, flipdim, includeAnnotation, replace, reshape, select, select, select, selectColumns, selectColumns, selectRows, selectRows, shuffle, sortrows, squeeze, subMatrix, swap, toColumnVector, toRowVector, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.rounding.RoundingDoubleCalculations
ceil, floor, round
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.statistical.StatisticalDoubleCalculations
corrcoef, cov, cumprod, cumsum, diff, indexOfMax, indexOfMin, max, mean, min, mutualInf, pairedTTest, prod, std, sum, var
-
Methods inherited from interface org.ujmp.core.stringmatrix.calculation.StringCalculations
convertEncoding, lowerCase, removePunctuation, removeWords, replaceRegex, replaceRegex, stem, tfIdf, translate, upperCase
-
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.trigonometric.TrigonometricDoubleCalculations
cos, sin, tan
-
-
-
-
Field Detail
-
serialVersionUID
private static final long serialVersionUID
- See Also:
- Constant Field Values
-
directed
private boolean directed
-
nodes
private final java.util.List<N> nodes
-
edges
private final java.util.Map<Coordinates,E> edges
-
parents
private final java.util.Map<java.lang.Long,java.util.List<java.lang.Long>> parents
-
children
private final java.util.Map<java.lang.Long,java.util.List<java.lang.Long>> children
-
-
Constructor Detail
-
DefaultGraphMatrix
public DefaultGraphMatrix()
-
DefaultGraphMatrix
public DefaultGraphMatrix(java.util.List<N> nodes)
-
-
Method Detail
-
getEdgeList
public java.util.Collection<E> getEdgeList()
-
availableCoordinates
public java.lang.Iterable<long[]> availableCoordinates()
Description copied from interface:CoordinateFunctions
Returns an Iterator that only goes over the coordinates in the Matrix that are stored. For most Matrices, this is the same as allCoordinates(). For sparse Matrices, it iterates only over the entries in it.- Specified by:
availableCoordinates
in interfaceCoordinateFunctions
- Overrides:
availableCoordinates
in classAbstractGraphMatrix<N,E>
- Returns:
- Iterable over the saved entries in a Matrix.
-
getNodeList
public java.util.List<N> getNodeList()
-
addNode
public void addNode(N o)
-
removeNode
public void removeNode(N o)
-
getEdgeCount
public int getEdgeCount()
-
getNodeCount
public int getNodeCount()
-
clear
public void clear()
-
getChildCount
public int getChildCount(long nodeIndex)
-
getNode
public N getNode(long index)
-
getParentCount
public int getParentCount(long nodeIndex)
-
getParentIndices
public java.util.List<java.lang.Long> getParentIndices(long index)
-
getChildIndices
public java.util.List<java.lang.Long> getChildIndices(long index)
-
removeNode
public void removeNode(long node)
-
isDirected
public boolean isDirected()
-
setDirected
public void setDirected(boolean directed)
-
setNode
public void setNode(N node, long index)
-
setEdge
public void setEdge(E edge, long nodeIndex1, long nodeIndex2)
-
getValueType
public ValueType getValueType()
- Specified by:
getValueType
in interfaceBaseMatrixProperties
- Overrides:
getValueType
in classAbstractMatrix
-
getEdge
public E getEdge(long nodeIndex1, long nodeIndex2)
-
removeEdge
public void removeEdge(E edge)
-
removeEdge
public void removeEdge(long nodeIndex1, long nodeIndex2)
-
-