Package org.ujmp.core.graphmatrix
Class AbstractGraphMatrix<N,E>
java.lang.Object
java.lang.Number
org.ujmp.core.AbstractMatrix
org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix<A>
org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix<A>
org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix2D<E>
org.ujmp.core.graphmatrix.AbstractGraphMatrix<N,E>
- All Implemented Interfaces:
Serializable
,Cloneable
,Comparable<Matrix>
,HasMetaData
,BaseMatrix
,BooleanCalculations
,CanPerformCalculations
,DenseMatrix
,DenseMatrix2D
,DenseMatrixMultiD
,BasicDoubleCalculations
,DoubleCalculations
,BasicEntrywiseDoubleCalculations
,CreatorDoubleCalculations
,EntrywiseDoubleCalculations
,HyperbolicDoubleCalculations
,MiscEntrywiseDoubleCalculations
,RoundingDoubleCalculations
,TrigonometricDoubleCalculations
,DecompositionDoubleCalculations
,DiscretizeCalculations
,GeneralDoubleCalculations
,MiscGeneralDoubleCalculations
,MissingValueDoubleCalculations
,StatisticalDoubleCalculations
,BaseGenericMatrix<E>
,DenseGenericMatrix<E>
,DenseGenericMatrix2D<E>
,DenseGenericMatrixMultiD<E>
,GenericMatrix<E>
,GenericMatrix2D<E>
,GenericMatrixMultiD<E>
,SparseGenericMatrix<E>
,SparseGenericMatrix2D<E>
,SparseGenericMatrixMultiD<E>
,GraphMatrix<N,
,E> BaseMatrixProperties
,Clearable
,Conversions
,CoordinateFunctions
,CoreObject
,DistanceMeasures
,ExtendedMatrixProperties
,GettersAndSetters
,HasDescription
,HasGUIObject
,HasId
,HasLabel
,IntCalculations
,Matrix
,Matrix2D
,MatrixMultiD
,ObjectCalculations
,SparseMatrix
,SparseMatrix2D
,SparseMatrixMultiD
,StringCalculations
- Direct Known Subclasses:
DefaultGraphMatrix
public abstract class AbstractGraphMatrix<N,E>
extends AbstractSparseGenericMatrix2D<E>
implements GraphMatrix<N,E>
- See Also:
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Field Summary
FieldsFields inherited from class org.ujmp.core.AbstractMatrix
guiObject, size
Fields inherited from interface org.ujmp.core.BaseMatrix
ALL, COLUMN, LINK, NEW, NONE, ORIG, ROW, X, Y, Z
Fields inherited from interface org.ujmp.core.DenseMatrix
Factory
Fields inherited from interface org.ujmp.core.DenseMatrix2D
Factory
Fields inherited from interface org.ujmp.core.interfaces.HasDescription
DESCRIPTION
Fields inherited from interface org.ujmp.core.annotation.HasMetaData
DIMENSIONMETADATA
Fields inherited from interface org.ujmp.core.Matrix
chol, divideMatrix, divideScalar, eig, Factory, inv, lu, minusMatrix, minusScalar, mtimes, plusMatrix, plusScalar, qr, solve, svd, timesMatrix, timesScalar, transpose
Fields inherited from interface org.ujmp.core.SparseMatrix
Factory
Fields inherited from interface org.ujmp.core.SparseMatrix2D
Factory
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionIterable<long[]>
Returns an Iterator that only goes over the coordinates in the Matrix that are stored.boolean
containsCoordinates
(long... coordinates) Determines if the given Coordinates are part of the Matrix.int
getChildCount
(N node) getChildIndices
(N node) getChildren
(long index) getChildren
(N node) int
getDegree
(long nodeIndex) int
getEdgesToChildren
(N node) getEdgesToParents
(N node) final long
getIndexOfNode
(N o) final E
getObject
(int row, int column) final E
getObject
(long row, long column) int
getParentCount
(N node) getParentIndices
(N node) getParents
(long index) getParents
(N node) final long[]
getSize()
final long
final boolean
isConnected
(long node1, long node2) boolean
isConnected
(N node1, N node2) final void
final void
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix2D
getDimensionCount, getObject, setObject
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix
isSparse
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix
getAsObject, setAsObject
Methods inherited from class org.ujmp.core.AbstractMatrix
abs, addMissing, allCoordinates, allValues, and, and, append, appendHorizontally, appendVertically, atimes, bigDecimalValue, bigIntegerValue, booleanValue, bootstrap, bootstrap, ceil, center, charValue, chebyshevDistanceTo, chol, clone, compareTo, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, convert, convertEncoding, corrcoef, cos, cosh, cosineSimilarity, cosineSimilarityTo, countMissing, cov, cumprod, cumsum, dateValue, delete, delete, delete, deleteColumns, deleteColumns, deleteColumnsWithMissingValues, deleteRows, deleteRows, deleteRowsWithMissingValues, det, diag, diff, discretize, discretize, discretizeToBoolean, discretizeToColumns, divide, divide, divide, divide, doubleValue, eig, eigSymm, eq, eq, equals, equalsAnnotation, equalsContent, euklideanDistance, euklideanDistanceTo, exp, exportTo, extractAnnotation, eye, fadeIn, fadeOut, fill, fireValueChanged, fireValueChanged, fireValueChanged, flipdim, floatValue, floor, ge, ge, getAbsoluteValueMean, getAbsoluteValueSum, getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsShort, getAsString, getColumnCount, getColumnForLabel, getColumnLabel, getColumnList, getCoordinatesOfMaximum, getCoordinatesOfMinimum, getCoreObjectId, getDescription, getDimensionLabel, getDimensionMetaData, getEuklideanValue, getFactory, getGUIObject, getId, getLabel, getLabelObject, getMaxValue, getMeanValue, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getMinValue, getPositionForLabel, getPreferredObject, getRMS, getRowCount, getRowForLabel, getRowLabel, getRowList, getSize, getStdValue, getValueSum, getValueType, getZCount, ginv, grayScale, gt, gt, importFrom, impute, includeAnnotation, indexOfMax, indexOfMin, intValue, inv, invSPD, invSymm, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSPD, isSquare, isSymmetric, isTransient, le, le, log, log10, log2, logistic, longValue, lowerCase, lt, lt, lu, manhattenDistance, manhattenDistanceTo, max, mean, min, minkowskiDistance, minkowskiDistanceTo, minus, minus, minus, minus, mtimes, mtimes, mutualInf, nans, ne, ne, nonZeroCoordinates, norm1, norm2, normalize, normF, normInf, not, ones, or, or, pairedTTest, pdet, pinv, pinv, plus, plus, plus, plus, power, power, princomp, prod, qr, rand, randn, rank, removePunctuation, removeWords, replace, replaceMissingBy, replaceRegex, replaceRegex, reshape, round, save, save, select, select, select, selectColumns, selectColumns, selectedCoordinates, selectedCoordinates, selectRows, selectRows, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsShort, setAsString, setColumnLabel, setContent, setDescription, setDimensionLabel, setDimensionMetaData, setId, setLabel, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel, setSize, share, share, showGUI, shuffle, sign, sin, sinh, solve, solveSPD, solveSymm, sortrows, sqrt, squeeze, standardize, std, stem, stringValue, subMatrix, sum, svd, svd, swap, tan, tanh, tanh, tfIdf, times, times, times, times, toBigDecimalArray, toBigDecimalMatrix, toBigIntegerArray, toBigIntegerMatrix, toBooleanArray, toBooleanMatrix, toByteArray, toByteMatrix, toCharArray, toCharMatrix, toColumnVector, toDateArray, toDoubleArray, toDoubleMatrix, toFloatArray, toFloatMatrix, toHtml, toIntArray, toIntMatrix, toListMatrix, toLongArray, toLongMatrix, toMapMatrix, toObjectArray, toObjectMatrix, toRowVector, toSetMatrix, toShortArray, toShortMatrix, toString, toStringArray, toStringMatrix, trace, translate, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount, upperCase, var, xor, xor, zeros
Methods inherited from class java.lang.Number
byteValue, shortValue
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface org.ujmp.core.BaseMatrix
getFactory
Methods inherited from interface org.ujmp.core.interfaces.BaseMatrixProperties
allValues, equals, equalsAnnotation, equalsContent, getColumnCount, getColumnList, getDimensionCount, getRowCount, getRowList, getSize, getValueType, getZCount, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSquare, isSymmetric, isTransient, setSize, toString
Methods inherited from interface org.ujmp.core.doublematrix.calculation.basic.BasicDoubleCalculations
atimes, divide, divide, divide, divide, minus, minus, minus, minus, mtimes, mtimes, plus, plus, plus, plus, times, times, times, times
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.basic.BasicEntrywiseDoubleCalculations
abs, exp, log, log10, log2, logistic, power, power, sign, sqrt
Methods inherited from interface org.ujmp.core.booleanmatrix.calculation.BooleanCalculations
and, and, eq, eq, ge, ge, gt, gt, le, le, lt, lt, ne, ne, not, or, or, xor, xor
Methods inherited from interface java.lang.Comparable
compareTo
Methods inherited from interface org.ujmp.core.interfaces.Conversions
toBigDecimalMatrix, toBigIntegerMatrix, toBooleanMatrix, toByteMatrix, toCharMatrix, toDoubleMatrix, toFloatMatrix, toIntMatrix, toListMatrix, toLongMatrix, toMapMatrix, toObjectMatrix, toSetMatrix, toShortMatrix, toStringMatrix
Methods inherited from interface org.ujmp.core.interfaces.CoordinateFunctions
allCoordinates, getCoordinatesOfMaximum, getCoordinatesOfMinimum, nonZeroCoordinates, selectedCoordinates, selectedCoordinates
Methods inherited from interface org.ujmp.core.interfaces.CoreObject
getCoreObjectId
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.creators.CreatorDoubleCalculations
eye, nans, ones, rand, randn, zeros
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.decomposition.DecompositionDoubleCalculations
chol, eig, eigSymm, ginv, inv, invSPD, invSymm, lu, pinv, pinv, princomp, qr, solve, solveSPD, solveSymm, svd, svd
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.discretize.DiscretizeCalculations
discretize, discretize, discretizeToBoolean, discretizeToColumns
Methods inherited from interface org.ujmp.core.interfaces.DistanceMeasures
chebyshevDistanceTo, cosineSimilarity, cosineSimilarityTo, euklideanDistance, euklideanDistanceTo, manhattenDistance, manhattenDistanceTo, minkowskiDistance, minkowskiDistanceTo
Methods inherited from interface org.ujmp.core.interfaces.ExtendedMatrixProperties
bigDecimalValue, bigIntegerValue, booleanValue, byteValue, charValue, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, dateValue, det, doubleValue, floatValue, getAbsoluteValueMean, getAbsoluteValueSum, getEuklideanValue, getMaxValue, getMeanValue, getMinValue, getRMS, getStdValue, getValueSum, intValue, isSPD, longValue, norm1, norm2, normF, normInf, pdet, rank, setContent, shortValue, stringValue, trace
Methods inherited from interface org.ujmp.core.interfaces.GettersAndSetters
getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsObject, getAsShort, getAsString, getPreferredObject, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsObject, setAsShort, setAsString, toBigDecimalArray, toBigIntegerArray, toBooleanArray, toByteArray, toCharArray, toDateArray, toDoubleArray, toFloatArray, toIntArray, toLongArray, toObjectArray, toShortArray, toStringArray
Methods inherited from interface org.ujmp.core.graphmatrix.GraphMatrix
addNode, getChildCount, getChildIndices, getEdge, getEdgeCount, getNode, getNodeCount, getNodeList, getParentCount, getParentIndices, isDirected, removeEdge, removeEdge, removeNode, removeNode, setDirected, setEdge, setEdge, setNode
Methods inherited from interface org.ujmp.core.interfaces.HasDescription
getDescription, setDescription
Methods inherited from interface org.ujmp.core.interfaces.HasGUIObject
getGUIObject, showGUI
Methods inherited from interface org.ujmp.core.interfaces.HasLabel
getLabel, getLabelObject, setLabel
Methods inherited from interface org.ujmp.core.annotation.HasMetaData
getColumnForLabel, getColumnLabel, getDimensionLabel, getDimensionMetaData, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getPositionForLabel, getRowForLabel, getRowLabel, setColumnLabel, setDimensionLabel, setDimensionMetaData, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.hyperbolic.HyperbolicDoubleCalculations
cosh, sinh, tanh, tanh
Methods inherited from interface org.ujmp.core.Matrix
clone, exportTo, fireValueChanged, fireValueChanged, fireValueChanged, importFrom, save, save, share, share, toHtml
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.misc.MiscEntrywiseDoubleCalculations
grayScale
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.misc.MiscGeneralDoubleCalculations
append, appendHorizontally, appendVertically, center, fadeIn, fadeOut, normalize, replaceMissingBy, standardize
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.missingvalues.MissingValueDoubleCalculations
addMissing, countMissing, deleteColumnsWithMissingValues, deleteRowsWithMissingValues, impute
Methods inherited from interface org.ujmp.core.objectmatrix.calculation.ObjectCalculations
bootstrap, bootstrap, convert, delete, delete, delete, deleteColumns, deleteColumns, deleteRows, deleteRows, diag, extractAnnotation, fill, flipdim, includeAnnotation, replace, reshape, select, select, select, selectColumns, selectColumns, selectRows, selectRows, shuffle, sortrows, squeeze, subMatrix, swap, toColumnVector, toRowVector, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.rounding.RoundingDoubleCalculations
ceil, floor, round
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.statistical.StatisticalDoubleCalculations
corrcoef, cov, cumprod, cumsum, diff, indexOfMax, indexOfMin, max, mean, min, mutualInf, pairedTTest, prod, std, sum, var
Methods inherited from interface org.ujmp.core.stringmatrix.calculation.StringCalculations
convertEncoding, lowerCase, removePunctuation, removeWords, replaceRegex, replaceRegex, stem, tfIdf, translate, upperCase
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.trigonometric.TrigonometricDoubleCalculations
cos, sin, tan
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Field Details
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serialVersionUID
private static final long serialVersionUID- See Also:
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Constructor Details
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AbstractGraphMatrix
public AbstractGraphMatrix()
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Method Details
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containsCoordinates
public boolean containsCoordinates(long... coordinates) Description copied from interface:CoordinateFunctions
Determines if the given Coordinates are part of the Matrix. If the Matrix is dense, true is returned for all Coordinates smaller than the Matrix's size. For sparse Matrices, this function checks if the coordinates are actually stored in the matrix or not.- Specified by:
containsCoordinates
in interfaceCoordinateFunctions
- Parameters:
coordinates
- The coordinates to check- Returns:
- a boolean stating if the coordinates are part of the Matrix
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isConnected
- Specified by:
isConnected
in interfaceGraphMatrix<N,
E>
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getParents
- Specified by:
getParents
in interfaceGraphMatrix<N,
E>
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getEdgesToParents
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getEdgesToChildren
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getParents
- Specified by:
getParents
in interfaceGraphMatrix<N,
E>
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getChildren
- Specified by:
getChildren
in interfaceGraphMatrix<N,
E>
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getParentIndices
- Specified by:
getParentIndices
in interfaceGraphMatrix<N,
E>
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getEdge
- Specified by:
getEdge
in interfaceGraphMatrix<N,
E>
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getDegree
- Specified by:
getDegree
in interfaceGraphMatrix<N,
E>
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getDegree
public int getDegree(long nodeIndex) - Specified by:
getDegree
in interfaceGraphMatrix<N,
E>
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getChildCount
- Specified by:
getChildCount
in interfaceGraphMatrix<N,
E>
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getParentCount
- Specified by:
getParentCount
in interfaceGraphMatrix<N,
E>
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getChildIndices
- Specified by:
getChildIndices
in interfaceGraphMatrix<N,
E>
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getChildren
- Specified by:
getChildren
in interfaceGraphMatrix<N,
E>
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availableCoordinates
Description copied from interface:CoordinateFunctions
Returns an Iterator that only goes over the coordinates in the Matrix that are stored. For most Matrices, this is the same as allCoordinates(). For sparse Matrices, it iterates only over the entries in it.- Specified by:
availableCoordinates
in interfaceCoordinateFunctions
- Returns:
- Iterable over the saved entries in a Matrix.
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getSize
public final long[] getSize()- Specified by:
getSize
in interfaceBaseMatrixProperties
- Overrides:
getSize
in classAbstractMatrix
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getObject
- Specified by:
getObject
in interfaceGenericMatrix2D<N>
- Overrides:
getObject
in classAbstractGenericMatrix<E>
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getObject
- Specified by:
getObject
in interfaceGenericMatrix2D<N>
- Overrides:
getObject
in classAbstractGenericMatrix<E>
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getValueCount
public final long getValueCount()- Specified by:
getValueCount
in interfaceBaseMatrixProperties
- Overrides:
getValueCount
in classAbstractMatrix
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setObject
- Specified by:
setObject
in interfaceGenericMatrix2D<N>
- Overrides:
setObject
in classAbstractGenericMatrix<E>
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setObject
- Specified by:
setObject
in interfaceGenericMatrix2D<N>
- Overrides:
setObject
in classAbstractGenericMatrix<E>
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isConnected
public final boolean isConnected(long node1, long node2) - Specified by:
isConnected
in interfaceGraphMatrix<N,
E>
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getIndexOfNode
- Specified by:
getIndexOfNode
in interfaceGraphMatrix<N,
E>
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