Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium


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Documentation for package ‘LDtests’ version 1.0

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LDtests-package Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
Fisher1sided 1-sided Fisher's test of linkage disequilibrium
HWE2sided P-values for three different tests of HWE
HWE2sided.table Table and plot of Hardy-Weinberg p-values for all 2x2 tables possible under the null distribution.
LD2sided.pvals P-values and Linkage Disequilibrium measures for several tests of Linkage Disequilibrium
LD2sided.tables Tables of p-values and Linkage Disequilibrium measures for all 2x2 tables possible under the null distribution.
LDtests Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium