The Partial Least Squares (PLS) Biplot

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Documentation for package ‘PLSbiplot1’ version 0.1

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cov.biplot The covariance biplot
cov.monoplot The covariance monoplot
Mag.Bmat.plot Magnitude of the Partial Least Squares Regression (PLSR) coefficients matrix
mod.KernelPLS_L The Kernel algorithm for few(er) variables but large samples by Lindgren et al. (1993)
mod.KernelPLS_R The Kernel algorithm for few(er) samples but large variables by Rannar et al. (1994)
mod.MMLR Multivariate Multiple Linear Regression (MMLR)
mod.NIPALS The Nonlinear Iterative PArtial Least Squares (NIPALS) algorithm
mod.PCA Principal Component Analysis (PCA)
mod.PCR Principal Component Regression (PCR)
mod.SIMPLS The Statistical Inspired Modification to Partial Least Squares (SIMPLS) algorithm
mod.SPLS Sparse Partial Least Squares (SPLS) algorithm
mod.VIP The Variable Importance in the Projection (VIP) values
opt.penalty.values Choosing a value for penalty parameters lambdaX and lambdaY for the Sparse Partial Least Squares (SPLS) and Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) analyses
PCA.biplot The Principal Component Analysis (PCA) biplot
PCA.biplot_no.SN The Principal Component Analysis (PCA) biplot with the labels of the samples points excluded
PLS.binomial.GLM Partial Least Squares-Generalized Linear Model (PLS-GLM) fitted for Binomial y
PLS.biplot The Partial Least Squares (PLS) biplot
PLS.biplot.area The Partial Least Squares (PLS) biplot with triangles for estimating the Partial Least Squares Regression (PLSR) coefficients
PLS.biplot_no.SN The Partial Least Squares (PLS) biplot with no sample points names
PLS.biplot_no_labels The Partial Least Squares (PLS) biplot with the labels of the samples, coefficient points and tick markers excluded
PLS.GLM Partial Least Squares-Generalized Linear Model (PLS-GLM) algorithm
PLS.GLM.biplot The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM)
PLS.GLM.biplot_bvec A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM)
PLS.GLM.biplot_no.SN The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) with the labels of the sample points excluded
PLS.GLM.biplot_no_labels The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM), with the labels of the samples, coefficient points and tick markers excluded
PLS.GLM.biplot_SIMPLS The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) fitted using the SIMPLS algorithm
PLS.GLM.biplot_SIMPLS_no.SN The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) fitted using the SIMPLS algorithm, with the labels of the sample points excluded
PLS.GLM_SIMPLS Partial Least Squares-Generalized Linear Model (PLS-GLM) fitted using the SIMPLS algorithm
SPLS.binomial.GLM Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) algorithm for Binomial y
SPLS.biplot The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS)
SPLS.biplot_Bmat A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS)
SPLS.biplot_no_ax.labels The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS), with the labels of the tick markers excluded
SPLS.biplot_no_labels The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS), with the labels of the samples, coefficient points and tick markers excluded
SPLS.GLM Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) algorithm
SPLS.GLM.biplot The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM)
SPLS.GLM.biplot_bvec A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM)
SPLS.GLM.biplot_no.SN The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM), with the labels of the sample points excluded