Spectrally Deconfounded Models


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Documentation for package ‘SDModels’ version 1.0.10

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copy Copy a forest
copy.SDForest Copy a forest
copy.SDTree Copy a tree
cvSDTree Cross-validation for the SDTree
fromList SDForest fromList method
fromList.SDForest SDForest fromList method
fromList.SDTree SDTree fromList method
f_four Function of x on a fourier basis
get_cp_seq Get the sequence of complexity parameters of an SDForest
get_cp_seq.SDForest Get the sequence of complexity parameters of an SDForest
get_cp_seq.SDTree Get the sequence of complexity parameters of an SDTree
get_Q Estimation of spectral transformation
get_W Estimation of anchor transformation
mergeForest Merge two forests
partDependence Partial dependence
plot.partDependence Plot partial dependence
plot.paths Visualize the paths of an SDTree or SDForest
plot.SDTree Plot SDTree
plotOOB Visualize the out-of-bag performance of an SDForest
predict.SDAM Predictions for SDAM
predict.SDForest Predictions for the SDForest
predict.SDTree Predictions for the SDTree
predictOOB Out-of-bag predictions for the SDForest
predict_individual_fj Predictions of individual component functions for SDAM
print.partDependence Print partDependence
print.SDAM Print SDAM
print.SDForest Print SDForest
print.SDTree Print a SDTree
prune Prune an SDForest
prune.SDForest Prune an SDForest
prune.SDTree Prune an SDTree
regPath Calculate the regularization path of an SDForest
regPath.SDForest Calculate the regularization path of an SDForest
regPath.SDTree Calculate the regularization path of an SDTree
SDAM Spectrally Deconfounded Additive Models
SDForest Spectrally Deconfounded Random Forests
SDTree Spectrally Deconfounded Tree
simulate_data_nonlinear Simulate data with linear confounding and non-linear causal effect
simulate_data_step Simulate data with linear confounding and causal effect following a step-function
stabilitySelection Calculate the stability selection of an SDForest
stabilitySelection.SDForest Calculate the stability selection of an SDForest
toList SDForest toList method
toList.SDForest SDForest toList method
toList.SDTree SDTree toList method
varImp Extract variable importance of an SDForest
varImp.SDAM Extract Variable importance for SDAM
varImp.SDForest Extract variable importance of an SDForest
varImp.SDTree Extract variable importance of an SDTree