Characterizing Temporal Dysregulation


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Documentation for package ‘tempoR’ version 1.0.4.4

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dflatExample A subset of the DFLAT gene sets
gse32472Example A subset of the GSE32472 BPD data set
gse32472ExampleTempoResults TEMPO results for the GSE32472 subset example data set
loadCLS Load a categorical or continuous cls formatted file.
loadGCT Load a Gene Cluster Text formatted file
loadGMT Load a Gene Matrix Transposed formatted file
tempo.mkplot Make a plot for a specified gene sets
tempo.permutationTest Permutation testing for TEMPO
tempo.run The main method.
tempo.runInstance Build models for all pathways using the control data and test on the test population.
tempo.writeOutput Write output