Reproducible, Accessible & Shareable Species Distribution Modelling


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Documentation for package ‘zoon’ version 0.6.5

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AplumbeusOcc UK occurrence data for Anopheles plumbeus as taken from GBIF
BuildModule BuildModule
cbindZoon cbindZoon
Chain Chain modules together
ChangeWorkflow Change a workflow and rerun.
CombineRasters Combine rasters
Covariate Accessor functions for getting module outputs from a workflow object
CWBZim Presence/absence of the coffee white stem borer in Zimbabwe 2003
ExtractAndCombData ExtractAndCombData
FindExtent Determine the Extent of Interest
FrescaloBias Example bias raster for plants in England
GetMaxEnt Get MaxEnt
GetModuleList GetModuleList
GetPackage Helper to install (if needed) and load a package
LoadModule A function to load a module function from url or disk.
Model Accessor functions for getting module outputs from a workflow object
ModuleArguments ModuleArguments
ModuleHelp ModuleHelp
Occurrence Accessor functions for getting module outputs from a workflow object
Output Accessor functions for getting module outputs from a workflow object
plot.zoonWorkflow Plot a schematic illustration of a zoon workflow structure.
print.zoonCitation A function to print zoonCitation
print.zoonWorkflow A function to print a zoonWorkflow object
Process Accessor functions for getting module outputs from a workflow object
Replicate Replicate a module multiple times
RerunWorkflow Rerun a workflow object.
RunModels RunModels
subsetColumnsZoon subsetColumnsZoon
summary.zoonWorkflow A function to summarize the output of a zoon workflow
TransformCRS Change the CRS of occurrence data
UKAirRas UK Air temperature raster layer.
workflow Run a full workflow.
zoon Zoon: A package for comparing multiple SDM models, good model diagnostics and better reproducibility
ZoonCitation ZoonCitation
ZoonFigshare ZoonFigshare
ZoonModel ZoonModel
ZoonModuleParse Parse a module file to read roxygen tags
ZoonPredict ZoonPredict