FlywayNet-package | 'FlywayNet' package: infer the structure of migratory bird flyway networks given counts |
estimate_migration_ABC | Estimates migration parameters using an ABC method. |
estimate_migration_from_trajectories | Estimates migration parameters using trajectories. |
estimate_migration_from_trajectories_C | Internal C function (do not use). |
estimate_migration_MCEM | Estimates migration parameters using an MCEM method. |
estimate_migration_MCEM_C | Internal C function (do not use). |
generate_modified_migration | Return a modified migration according generative parameters. |
generate_observedcounts | Generate observed counts from the set of bird trajectories. |
generate_random_migration | Generate a migration structure with a random structure. |
generate_toy_migration | Generate a toy migration structure with 5 sites. |
generate_trajectories | Generate trajectories of birds. |
generate_trajectories_C | Internal C function (do not use). |
get_counts | Count birds on each site at each time step from given set of trajectories. |
get_counts_C | Internal C function (do not use). |
get_freeparametersvalue | Extract free parameter values from a migration structure. |
get_observation_probability | Computes the probability of observations given the birds count from trajectories. |
get_observation_probability_C | Internal C function (do not use). |
get_paramlikelihood | Computes, by simulation, the log-likelihood of parameters |
new_migration | Initialize a migration structure. |
plot.migration | Plot a migration network from transition probabilities and mean sojourn time parameters. |
plot_observedcounts | Barplot observed counts at different sites and time steps. |
plot_trajectories | Barplot of birds counts par site and per time step, given bird trajectories. |
read_migration | Read a migration structure in a text file. |
reestimate_migration_from_MCEMruns | Estimates migration parameters from multiple MCEM runs |
set_freeparametersvalue | Assign free parameter values to a migration structure. |
validate_migration | Check a migration structure. |
write_migration | Write a migration structure in a text file. |