BMRB Data Access and Visualization
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Documentation for package ‘RBMRB’ version 2.1.7
Help Pages
| atom_chem_shift_corr | Chemical shift correlation between given pair of atoms in a given amino acid (or) nucleic acid |
| chemical_shift_hist | Plots chemical shift distribution |
| chemical_shift_hists | Plots chemical shift distribution for a list of atoms |
| chemical_shift_hist_res | Plots chemical shift distribution of all atoms of a given amino acid |
| chem_shift_corr | Chemical shift correlation between any two atoms from a single residue |
| convert_cs_to_c13hsqc | Reformats chemical shift dataframe for easy plotting |
| convert_cs_to_n15hsqc | Reformats chemical shift dataframe for easy plotting |
| convert_cs_to_tocsy | Reformats chemical shift dataframe for easy plotting |
| export_star_data | Exports NMR-STAR file to BMRB API server |
| fetch_atom_chemical_shifts | Imports all chemical shifts of a given atom from BMRB database |
| fetch_entry_chemical_shifts | Imports chemical shift table for a given entry or list of entries from BMRB data base |
| fetch_entry_cs | Imports checmial shift table for a given entry id from BMRB data base |
| fetch_res_chemical_shifts | Imports chemical shift data for a given amino acid/nucleic acid |
| filter_outlier | Remove chemical shift outliers |
| filter_residue | Filter for standard 20 amino acids |
| HSQC_13C | Simulates H1-C13 HSQC spectra for a given entry or list of entries from BMRB |
| HSQC_15N | Simulates H1-N15 HSQC spectra for a given entry or list of entries from BMRB |
| makeRandomString | Generates random string of fixed length(for internal use in RBMRB) |
| TOCSY | Simulates TOCSY spectra for a given entry or a list of entries from BMRB |