Access to the Neotoma Paleoecological Database Through R
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Documentation for package ‘neotoma’ version 1.7.4
Help Pages
| ages | Access proxy age data |
| ages.download | Access proxy age data |
| ages.download_list | Access proxy age data |
| bind | Function to bind objects together into a longer object. |
| browse | Open a browser window to display a Neotoma dataset within the Neotoma Explorer |
| browse.dataset | Open a browser window to display a Neotoma dataset within the Neotoma Explorer |
| browse.dataset_list | Open a browser window to display a Neotoma dataset within the Neotoma Explorer |
| browse.default | Open a browser window to display a Neotoma dataset within the Neotoma Explorer |
| browse.download | Open a browser window to display a Neotoma dataset within the Neotoma Explorer |
| browse.download_list | Open a browser window to display a Neotoma dataset within the Neotoma Explorer |
| compile_downloads | Compile download objects |
| compile_taxa | Function to convert assemblage taxa to standardized lists. |
| counts | Access proxy count data |
| counts.download | Access proxy count data |
| counts.download_list | Access proxy count data |
| depths | Extracts the depth values from a 'download' object |
| depths.default | Extracts the depth values from a 'download' object |
| depths.download | Extracts the depth values from a 'download' object |
| depths.download_list | Extracts the depth values from a 'download' object |
| download | A class for download objects. |
| get_chroncontrol | Function to return chronological control tables used to build age models. |
| get_chroncontrol.dataset | Function to return chronological control tables from a 'dataset'. |
| get_chroncontrol.dataset_list | Function to return chronological control tables from a 'dataset_list'. |
| get_chroncontrol.default | Function to return chronological control tables from a chronologic ID. |
| get_chroncontrol.download | Function to return chronological control tables from a 'download' object. |
| get_chroncontrol.download_list | Function to return chronological control tables from a 'download_list' object. |
| get_closest | Find the closest dataset records to a site, dataset or long/lat pair in Neotoma |
| get_contact | Get contact information. |
| get_dataset | Obtain dataset information from the Neotoma Paleoecological Database or an existing object. |
| get_dataset.default | Obtain dataset information from the Neotoma Paleoecological Database or an existing object. |
| get_dataset.download | Obtain dataset information from an existing 'download' object. |
| get_dataset.download_list | Obtain dataset information from a 'download_list'. |
| get_dataset.geochronologic | Obtain dataset information from an object of class 'geochronologic'. |
| get_dataset.geochronologic_list | Obtain dataset information from an object of class 'geochronologic_list'. |
| get_dataset.integer | Obtain dataset information from a vector of dataset IDs. |
| get_dataset.numeric | Obtain dataset information from a vector of dataset IDs. |
| get_dataset.site | Obtain dataset information from an existing 'site' object. |
| get_download | Function to return full download records using 'site's, 'dataset's, or dataset IDs. |
| get_download.dataset | Function to return full download records using a 'dataset'. |
| get_download.dataset_list | Function to return full download records using a 'dataset_list'. |
| get_download.default | Function to return full download records using 'numeric' dataset IDs. |
| get_download.site | Function to return full download records using a 'site'. |
| get_geochron | Function to return geochronological data from records. |
| get_publication | A function to get publications for sites or datasets in the Neotoma Database using the API. |
| get_publication.dataset | A function to get publications for datasets in the Neotoma Database using the API. |
| get_publication.dataset_list | A function to get publications for dataset_lists in the Neotoma Database using the API. |
| get_publication.default | A function to get publications for sites or datasets in the Neotoma Database using the API. |
| get_publication.download | A function to get publications for downloads in the Neotoma Database using the API. |
| get_publication.download_list | A function to get publications for datasets in the Neotoma Database using the API. |
| get_site | Return Site Information. |
| get_site.dataset | Return Site Information from a numeric list of site ids. |
| get_site.dataset_list | Return Site Information from a 'dataset_list' |
| get_site.default | Return Site Information. |
| get_site.download | Return Site Information from a 'download' |
| get_site.download_list | Return Site Information from a 'download_list' |
| get_site.geochronologic | Return Site Information from a 'geochronologic' |
| get_site.geochronologic_list | Return Site Information from a 'geochronologic_list' |
| get_site.integer | Return Site Information from a vector of integers. |
| get_site.numeric | Return Site information from a vector of numeric elements. |
| get_table | Get Neotoma value tables. |
| get_taxa | Get taxon information from Neotoma. |
| gp.table | A list of all the geopolitical entities in the Neotoma database. |
| plot_leaflet | Leaflet plots for neotoma data. |
| pollen.equiv | A table to convert the pollen taxa identified by investigators to standardized lists. |
| read.tilia | Read proxy data from Tilia TLX files |
| read_bacon | Function to read in defined Bacon outputs. |
| Stratiplot.download | Palaeoecological stratigraphic diagrams |
| Stratiplot.download_list | Palaeoecological stratigraphic diagrams |
| taxa | Access proxy taxonomic data |
| taxa.download | Access proxy taxonomic data |
| taxa.download_list | Access proxy taxonomic data |
| taxon.list | Neotoma taxon list |
| translate.table | A table to convert the original taxa to standardized lists. |
| write_agefile | Write age control file to disk formatted for either Bacon or Clam |