Integrator of Bioinformatics Resources


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Documentation for package ‘BioInstaller’ version 0.3.7

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BioInstaller-package This package is a new platform to construct interactive and reproducible biological data analysis applications based on R language, which includes the R functions and R Shiny application, REST APIs.
BioInstaller This package is a new platform to construct interactive and reproducible biological data analysis applications based on R language, which includes the R functions and R Shiny application, REST APIs.
change.info Update biologly softwares infomation of system
conda Wrapper function of conda
conda.env.create Wrapper function of 'conda env create', create an environment based on an environment file
conda.env.list Wrapper function of 'conda env list', list the Conda environments
conda.list Wrapper function of 'conda list', list linked packages in a conda environment.
copy_configs Function to copy the default configuration file of BioInstaller
copy_plugins Function to copy the default plugins of BioInstaller
crawl.all.versions A function can be used to craw all source code from nongithub.cfg stored information
del.info Delete biologly softwares infomation of system
docker.pull Use docker to pull image
docker.search Search softwares docker infomation in BioInstaller docker database
get.info Show biologly softwares infomation of system
get.meta Get meta information of BioInstaller collected sources, such as database, GitHub source, non-GitHub source, web source
get.meta.files Get all BioInstaller meta files path, such as database, GitHub source, non-GitHub source, web source
install.bioinfo Download and install biology software or database
install.github Install or download softwares from Github
install.nongithub Install or download softwares from non-Github Web site
is.biosoftwares.db.active Test active configuration file
new.bioinfo Create new BioInstaller items to github forum
set.biosoftwares.db Set BIO_SOFWARES_DB_ACTIVE as the BioInstaller db
set_shiny_workers Function to set shiny workers for background service
show.installed Show all installed bio-softwares in system
spack Wrapper function of spack
spack.list Wrapper function of 'spack list', list and search available packages
web Function to run BioInstaller shiny APP service