BioInstaller-package |
This package is a new platform to construct interactive and reproducible biological data analysis applications based on R language, which includes the R functions and R Shiny application, REST APIs. |
BioInstaller |
This package is a new platform to construct interactive and reproducible biological data analysis applications based on R language, which includes the R functions and R Shiny application, REST APIs. |
change.info |
Update biologly softwares infomation of system |
conda |
Wrapper function of conda |
conda.env.create |
Wrapper function of 'conda env create', create an environment based on an environment file |
conda.env.list |
Wrapper function of 'conda env list', list the Conda environments |
conda.list |
Wrapper function of 'conda list', list linked packages in a conda environment. |
copy_configs |
Function to copy the default configuration file of BioInstaller |
copy_plugins |
Function to copy the default plugins of BioInstaller |
crawl.all.versions |
A function can be used to craw all source code from nongithub.cfg stored information |
del.info |
Delete biologly softwares infomation of system |
docker.pull |
Use docker to pull image |
docker.search |
Search softwares docker infomation in BioInstaller docker database |
get.info |
Show biologly softwares infomation of system |
get.meta |
Get meta information of BioInstaller collected sources, such as database, GitHub source, non-GitHub source, web source |
get.meta.files |
Get all BioInstaller meta files path, such as database, GitHub source, non-GitHub source, web source |
install.bioinfo |
Download and install biology software or database |
install.github |
Install or download softwares from Github |
install.nongithub |
Install or download softwares from non-Github Web site |
is.biosoftwares.db.active |
Test active configuration file |
new.bioinfo |
Create new BioInstaller items to github forum |
set.biosoftwares.db |
Set BIO_SOFWARES_DB_ACTIVE as the BioInstaller db |
set_shiny_workers |
Function to set shiny workers for background service |
show.installed |
Show all installed bio-softwares in system |
spack |
Wrapper function of spack |
spack.list |
Wrapper function of 'spack list', list and search available packages |
web |
Function to run BioInstaller shiny APP service |