autocorrP | Autocorrelation Function for Parenatge Assignment |
beta.loglik | Log-Likelihood of Beta |
consensusG | Obtains a consensus genotype from duplicate samples |
extractA | Allele Frequencies |
fillX.G | Mendelian Transition Probabilities |
GdataPed | GdataPed Object |
genotype.list | Genotype Objects for all Loci |
genotypeD | genotypeD Object |
getXlist | Design Matrices for the Multinomial Log-Linear Model |
insertPed | Inserts Founders into a Pedigree |
is.GdataPed | GdataPed Object |
is.genotypeD | genotypeD Object |
is.PdataPed | PdataPed Object |
is.priorPed | priorPed Object |
is.startPed | startPed Object |
is.tunePed | tunePed Object |
legalG | Legal Genotype Configurations |
MasterBayes | Maximum Likelihood and Markov chain Monte Carlo methods for Pedigree Reconstruction, Analysis and Simulation. |
MCMCped | Markov chain Monte Carlo Methods for Pedigree Reconstruction and Analysis |
mismatches | Parent-Offspring Genotype Mismatches |
MLE.beta | Maximum Likelihood Estimation of Beta |
MLE.ped | Maximum Likelihood Estimation of the Pedigree |
MLE.popsize | Maximum Likelihood Estimation of the Unsampled Population Size |
modeG | Posterior Mode of Genotypes |
modeP | Posterior Mode of Parents |
orderPed | Orders a Pedigree |
PdataPed | PdataPed Object |
popsize.loglik | Log-Likelihood of Unsampled Population Size |
post.pairs | Returns pairs of individuals that fall into specific relatedness categories |
priorPed | priorPed Object |
reordXlist | Reorders Design Matrices |
simgenotypes | Genotype and Genotyping Error Simulation |
simpedigree | Simulates a Pedigree given a Log-Linear Model |
startPed | startPed Object |
summary | genotypeD Object |
summary.genotypeD | genotypeD Object |
tunePed | tunePed Object |
varPed | Transforms Variables for a Multinomial Log-Linear Model |
WarblerG | Seychelles Warbler Genotypes |
WarblerP | Seychelles Warbler Phenotypes |