Zero-Inflated Beta-Binomial Modeling of Microbiome Count Data


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Documentation for package ‘ZIBBSeqDiscovery’ version 1.0

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ZIBBSeqDiscovery-package Zero-Inflated Beta-Binomial Modeling of Microbiome Count Data
constrained.estimate Estimate parameters with constrained approach
constrained.loglikelihood Define the objective function in optimization procedure for estimating parameters with constrained approach
data.Y Data set for ZIBBSeqDiscovery
fitZIBB The main function to fit ZIBB model
free.estimate Estimate parameters with free approach
free.loglikelihood Define the objective function in optimization procedure for estimating parameters with free approach
kostic.x Data set for ZIBBSeqDiscovery
kostic.y Data set for ZIBBSeqDiscovery
mcc.adj Using MCC method to replace NAs in the p values
regression Simple linear regression
ZIBBSeqDiscovery Zero-Inflated Beta-Binomial Modeling of Microbiome Count Data