Canonical Associative Learning Models and their Representations


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Documentation for package ‘calmr’ version 0.7.0

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A B C D E F G L M N P R S T

-- A --

aggregate CalmrExperiment methods
aggregate-method CalmrExperiment methods
AIC CalmrFit methods
AIC-method CalmrFit methods

-- B --

BIC CalmrFit methods
BIC-method CalmrFit methods

-- C --

CalmrDesign-class S4 class for calmr designs
CalmrDesign-methods CalmrDesign methods
CalmrExperiment-class S4 class for calmr experiments.
CalmrExperiment-methods CalmrExperiment methods
CalmrExperimentResult-class S4 class for calmr experiment results
CalmrFit-class S4 class for calmr Fit
CalmrFit-methods CalmrFit methods
CalmrResult-class S4 class for calmr results
CalmrResult-methods CalmrResult methods
CalmrRSA-class S4 class for calmr representational similarity analysis
CalmrRSA-methods CalmrRSA methods
calmr_model_graph Create a graph with calmr data
calmr_model_plot Create a plot with calmr data
calmr_verbosity Set verbosity options for calmr
compare_models Run models given a set of parameters

-- D --

design CalmrExperiment methods
design-method CalmrExperiment methods

-- E --

experiences CalmrExperiment methods
experiences-method CalmrExperiment methods
experiences<- CalmrExperiment methods
experiences<--method CalmrExperiment methods

-- F --

filter CalmrExperiment methods
filter-method CalmrExperiment methods
fit_model Fit model to data

-- G --

get_design Get basic designs
get_graph_opts Create a graph with calmr data
get_model Model information functions
get_optimizer_opts Get optimizer options
get_parameters Get model parameters
get_plot_opts Create a plot with calmr data
get_timings Get timing design parameters
graph CalmrExperiment methods
graph-method CalmrExperiment methods

-- L --

length-method CalmrExperiment methods

-- M --

make_experiment Make CalmrExperiment
mapping CalmrDesign methods
mapping-method CalmrDesign methods
model_information Model information functions
model_outputs Model information functions
model_parameters Model information functions

-- N --

NLL CalmrFit methods
NLL-method CalmrFit methods

-- P --

parameters CalmrExperiment methods
parameters-method CalmrExperiment methods
parameters<- CalmrExperiment methods
parameters<--method CalmrExperiment methods
parse CalmrExperiment methods
parse-method CalmrExperiment methods
parsed_results CalmrExperiment methods
parsed_results-method CalmrExperiment methods
parse_design Parse design data.frame
patch_graphs Create a graph with calmr data
patch_plots Create a plot with calmr data
pati Rat responses from Patittucci et al. 2016
phase_parser Parses a phase string
plot CalmrExperiment methods
plot-method CalmrExperiment methods
plot-method CalmrRSA methods
plotting_functions General plotting functions
plot_common_scale Create a plot with calmr data
plot_targetted_complex_trials General plotting functions
plot_targetted_tbins General plotting functions
plot_targetted_trials General plotting functions
plot_targetted_typed_trials General plotting functions
plot_tbins General plotting functions
plot_trials General plotting functions
predict CalmrFit methods
predict-method CalmrFit methods

-- R --

raw_results CalmrExperiment methods
raw_results-method CalmrExperiment methods
results CalmrExperiment methods
results-method CalmrExperiment methods
rsa Perform representational similarity analysis
run_experiment Run experiment

-- S --

set_calmr_palette Get/set the colour/fill palette for plots
set_reward_parameters Set reward parameters for ANCCR model
show-method CalmrDesign methods
show-method CalmrExperiment methods
show-method CalmrFit methods
show-method CalmrRSA methods
show-method CalmrResult methods
supported_families Model information functions
supported_models Model information functions
supported_optimizers Model information functions
supported_plots Model information functions
supported_timed_models Model information functions

-- T --

test CalmrRSA methods
test-method CalmrRSA methods
timings CalmrExperiment methods
timings-method CalmrExperiment methods
timings<- CalmrExperiment methods
timings<--method CalmrExperiment methods
trials CalmrExperiment methods
trials-method CalmrDesign methods
trials-method CalmrExperiment methods