aggregate | CalmrExperiment methods |
aggregate-method | CalmrExperiment methods |
AIC | CalmrFit methods |
AIC-method | CalmrFit methods |
BIC | CalmrFit methods |
BIC-method | CalmrFit methods |
CalmrDesign-class | S4 class for calmr designs |
CalmrDesign-methods | CalmrDesign methods |
CalmrExperiment-class | S4 class for calmr experiments. |
CalmrExperiment-methods | CalmrExperiment methods |
CalmrExperimentResult-class | S4 class for calmr experiment results |
CalmrFit-class | S4 class for calmr Fit |
CalmrFit-methods | CalmrFit methods |
CalmrResult-class | S4 class for calmr results |
CalmrResult-methods | CalmrResult methods |
CalmrRSA-class | S4 class for calmr representational similarity analysis |
CalmrRSA-methods | CalmrRSA methods |
calmr_model_graph | Create a graph with calmr data |
calmr_model_plot | Create a plot with calmr data |
calmr_verbosity | Set verbosity options for calmr |
compare_models | Run models given a set of parameters |
design | CalmrExperiment methods |
design-method | CalmrExperiment methods |
experiences | CalmrExperiment methods |
experiences-method | CalmrExperiment methods |
experiences<- | CalmrExperiment methods |
experiences<--method | CalmrExperiment methods |
filter | CalmrExperiment methods |
filter-method | CalmrExperiment methods |
fit_model | Fit model to data |
get_design | Get basic designs |
get_graph_opts | Create a graph with calmr data |
get_model | Model information functions |
get_optimizer_opts | Get optimizer options |
get_parameters | Get model parameters |
get_plot_opts | Create a plot with calmr data |
get_timings | Get timing design parameters |
graph | CalmrExperiment methods |
graph-method | CalmrExperiment methods |
length-method | CalmrExperiment methods |
make_experiment | Make CalmrExperiment |
mapping | CalmrDesign methods |
mapping-method | CalmrDesign methods |
model_information | Model information functions |
model_outputs | Model information functions |
model_parameters | Model information functions |
NLL | CalmrFit methods |
NLL-method | CalmrFit methods |
parameters | CalmrExperiment methods |
parameters-method | CalmrExperiment methods |
parameters<- | CalmrExperiment methods |
parameters<--method | CalmrExperiment methods |
parse | CalmrExperiment methods |
parse-method | CalmrExperiment methods |
parsed_results | CalmrExperiment methods |
parsed_results-method | CalmrExperiment methods |
parse_design | Parse design data.frame |
patch_graphs | Create a graph with calmr data |
patch_plots | Create a plot with calmr data |
pati | Rat responses from Patittucci et al. 2016 |
phase_parser | Parses a phase string |
plot | CalmrExperiment methods |
plot-method | CalmrExperiment methods |
plot-method | CalmrRSA methods |
plotting_functions | General plotting functions |
plot_common_scale | Create a plot with calmr data |
plot_targetted_complex_trials | General plotting functions |
plot_targetted_tbins | General plotting functions |
plot_targetted_trials | General plotting functions |
plot_targetted_typed_trials | General plotting functions |
plot_tbins | General plotting functions |
plot_trials | General plotting functions |
predict | CalmrFit methods |
predict-method | CalmrFit methods |
raw_results | CalmrExperiment methods |
raw_results-method | CalmrExperiment methods |
results | CalmrExperiment methods |
results-method | CalmrExperiment methods |
rsa | Perform representational similarity analysis |
run_experiment | Run experiment |
set_calmr_palette | Get/set the colour/fill palette for plots |
set_reward_parameters | Set reward parameters for ANCCR model |
show-method | CalmrDesign methods |
show-method | CalmrExperiment methods |
show-method | CalmrFit methods |
show-method | CalmrRSA methods |
show-method | CalmrResult methods |
supported_families | Model information functions |
supported_models | Model information functions |
supported_optimizers | Model information functions |
supported_plots | Model information functions |
supported_timed_models | Model information functions |
test | CalmrRSA methods |
test-method | CalmrRSA methods |
timings | CalmrExperiment methods |
timings-method | CalmrExperiment methods |
timings<- | CalmrExperiment methods |
timings<--method | CalmrExperiment methods |
trials | CalmrExperiment methods |
trials-method | CalmrDesign methods |
trials-method | CalmrExperiment methods |