Fetch and Explore the Cornell Lab of Ornithology Open Tree of Life Avian Phylogeny

Documentation for package ‘clootl’ version 0.1.1

clootl_data	A complex data store used in the package.
extractTree	Extract a tree from the complete Avian Phylogeny for a set of species
getCitations	Get the DOIs and quantify the contribution of published studies
get_avesdata_repo	Pull down full AvesData repository to a working directory
sampleTrees	Extract a cloud of trees from the complete Avian Phylogeny for a set of species
set_avesdata_repo_path	Set path to Aves Data folder already somewhere on your computer Based on https://github.com/CornellLabofOrnithology/auk/blob/main/R/auk-set-ebd-path.r
taxonomyGet	Load a bird taxonomy into the R environment
treeGet	Load a bird tree into the R environment