R Analysis package for iDynoMiCS Simulation Results

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Documentation for package ‘iDynoR’ version 1.0

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agent_getMeasureOverTime Technique 3: Example Methods for Processing Agent Information
agent_returnGridResolution Technique 2: Reading Agent State and Agent Sum Files
agent_returnIVoxels Technique 2: Reading Agent State and Agent Sum Files
agent_returnJVoxels Technique 2: Reading Agent State and Agent Sum Files
agent_returnKVoxels Technique 2: Reading Agent State and Agent Sum Files
agent_returnNumSpecies Technique 2: Reading Agent State and Agent Sum Files
agent_returnSimIteration Technique 2: Reading Agent State and Agent Sum Files
agent_returnSimTime Technique 2: Reading Agent State and Agent Sum Files
agent_returnSpeciesColumnTotal Technique 2: Reading Agent State and Agent Sum Files
agent_returnSpeciesResultData Technique 2: Reading Agent State and Agent Sum Files
env_returnConcentrationAndRateChange Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnGlobalProductionRates Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnMaxBiofilmThickness Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnMeanBiofilmThickness Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSimIteration Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSimTime Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSoluteGridIVoxels Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSoluteGridJVoxels Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSoluteGridKVoxels Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSoluteGridRes Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSpecifiedSoluteData Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnStdDevBiofilmThickness Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_soluteProductionRateOverTime Technique 5: Example Methods for Processing Solute Information
getSpeciesAbundance Technique 3: Example Methods for Processing Agent Information
getSpeciesSpecificAbundance Technique 3: Example Methods for Processing Agent Information
plotAgents Technique 3: Example Methods for Processing Agent Information
plotContour Technique 5: Example Methods for Processing Solute Information
plotTimeCourseAbund Technique 3: Example Methods for Processing Agent Information
plotTimeCourseAgents Technique 3: Example Methods for Processing Agent Information
readSimResultFile Technique 1: Read in Simulation Results
simpsonIndex Technique 3: Example Methods for Processing Agent Information