Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model

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Documentation for package ‘lmeNBBayes’ version 1.3.1

• DESCRIPTION file.

Help Pages

adjustPosDef	Generate posterior samples from a flexible mixed effect negative binomial regression model.
colmeansd	Generate posterior samples from a flexible mixed effect negative binomial regression model.
condProbCI	The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
dqmix	Estimate the random effect distribution of the flexible mixed effect negative binomial regression.
E.KN	Generate posterior samples from a flexible mixed effect negative binomial regression model.
getDIC	Compute the DIC given the output from 'lmeNBBayes'.
getM	Generate posterior samples from a flexible mixed effect negative binomial regression model.
getS.StatInMed	Generate samples from the flexible mixed-effect negative binomial distribution
index.b.each	The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
index.batch.Bayes	The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
index.YZ	The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
int.M	Generate posterior samples from a flexible mixed effect negative binomial regression model.
llk.FG_i	Compute the DIC given the output from 'lmeNBBayes'.
lmeNBBayes	Generate posterior samples from a flexible mixed effect negative binomial regression model.
lnpara	Generate posterior samples from a flexible mixed effect negative binomial regression model.
newCat	Generate posterior samples from a flexible mixed effect negative binomial regression model.
Nuniq	Generate posterior samples from a flexible mixed effect negative binomial regression model.
piM	Generate posterior samples from a flexible mixed effect negative binomial regression model.
plotbeta	Generate posterior samples from a flexible mixed effect negative binomial regression model.
plotgamma	Generate posterior samples from a flexible mixed effect negative binomial regression model.
plotGs	Generate posterior samples from a flexible mixed effect negative binomial regression model.
plotnbinom	Generate posterior samples from a flexible mixed effect negative binomial regression model.
pointsgamma	Generate posterior samples from a flexible mixed effect negative binomial regression model.
prIndex	The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
repeatAsID	Generate posterior samples from a flexible mixed effect negative binomial regression model.
slim	Generate posterior samples from a flexible mixed effect negative binomial regression model.
useSamp	Generate posterior samples from a flexible mixed effect negative binomial regression model.