Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Toolkit


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Documentation for package ‘PCRedux’ version 1.1-2

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PCRedux-package PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit
armor armor: fetch errors gently
autocorrelation_test A function to test for autocorrelation of amplification curve data from a quantitative PCR experiment
data_sample The datasets implemented in PCRedux
decision_modus A function to get a decision (modus) from a vector of classes
decision_res_kbqPCR The datasets implemented in PCRedux
earlyreg A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment.
encu A function to calculate numerous features from amplification curve data from a quantitative PCR experiment.
head2tailratio A function to calculate to head to tail ratio of amplification curve data from a quantitative PCR experiment
hookreg A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment at the end of the data stream.
hookregNL hookregNL - A function to calculate the slope of amplification curves in the tail region
humanrater2 Human Rater 2.0
kbqPCR The datasets implemented in PCRedux
l4 PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit
mblrr A function to perform a Local Robust Regression in Ranges defined by Qunantile-filtering
PCRedux PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit
pcrfit_single pcrfit_single - A function to extract features from an amplification curve
performeR Performance analysis for binary classification
qPCR2fdata A helper function to convert amplification curve data to the fdata format.
RAS002 The datasets implemented in PCRedux
RAS002_decisions The datasets implemented in PCRedux
run_PCRedux PCRedux app
tReem A function to Group Amplification Curves According to their Shape
winklR winklR: A function to calculate the angle based on the first and the second derivative of an amplification curve data from a quantitative PCR experiment.