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Settings

## [1] "bench3a.r"
##  chr "design_paper"

Table 3

## [1] "reports/report_Linux_2023-12-03_09_14_28_script_3_info_table3_rerun"
## [1] "bench3a.r"           "bench_settings.r"    "computing-time.txt"  "result_table3.RData" "settings_used.RData" "t.start.RData"

Table 3 - as in paper

marg nvar prob cov_n01 ncd_n01 cov_pro ncd_pro
edge 500 0.001 0.19 0.97 0.31 1.86
edge 1000 0.001 0.96 5.71 4.18 13.36
edge 2000 0.001 22.07 65.28 333.88 149.14
edge 4000 0.001 781.68 612.21 5975.33 911.64
edge 6000 0.001 3364.09 1614.66 25748.96 2095.99
edge 500 0.005 0.35 0.95 0.99 1.62
edge 1000 0.005 2.48 5.96 89.37 15.94
edge 2000 0.005 266.46 71.51 5330.66 268.02
edge 4000 0.005 5124.37 578.23 75499.72 1208.90
edge 500 0.010 0.86 1.28 5.36 2.34
edge 1000 0.010 28.18 8.58 462.85 25.16
edge 2000 0.010 868.92 75.16 18684.76 497.70
edge 4000 0.010 10499.69 679.49 242289.78 2954.54

Table 3 - long format

dat nvar method prob marg time
n01 500 cov 0.001 edge 0.19
n01 500 ncd 0.001 edge 0.97
n01 1000 cov 0.001 edge 0.96
n01 1000 ncd 0.001 edge 5.71
n01 2000 cov 0.001 edge 22.07
n01 2000 ncd 0.001 edge 65.28
n01 4000 cov 0.001 edge 781.68
n01 4000 ncd 0.001 edge 612.21
n01 6000 cov 0.001 edge 3364.09
n01 6000 ncd 0.001 edge 1614.66
pro 500 cov 0.001 edge 0.31
pro 500 ncd 0.001 edge 1.86
pro 1000 cov 0.001 edge 4.18
pro 1000 ncd 0.001 edge 13.36
pro 2000 cov 0.001 edge 333.88
pro 2000 ncd 0.001 edge 149.14
pro 4000 cov 0.001 edge 5975.33
pro 4000 ncd 0.001 edge 911.64
pro 6000 cov 0.001 edge 25748.96
pro 6000 ncd 0.001 edge 2095.99
n01 500 cov 0.005 edge 0.35
n01 500 ncd 0.005 edge 0.95
n01 1000 cov 0.005 edge 2.48
n01 1000 ncd 0.005 edge 5.96
n01 2000 cov 0.005 edge 266.46
n01 2000 ncd 0.005 edge 71.51
n01 4000 cov 0.005 edge 5124.37
n01 4000 ncd 0.005 edge 578.23
pro 500 cov 0.005 edge 0.99
pro 500 ncd 0.005 edge 1.62
pro 1000 cov 0.005 edge 89.37
pro 1000 ncd 0.005 edge 15.94
pro 2000 cov 0.005 edge 5330.66
pro 2000 ncd 0.005 edge 268.02
pro 4000 cov 0.005 edge 75499.72
pro 4000 ncd 0.005 edge 1208.90
n01 500 cov 0.010 edge 0.86
n01 500 ncd 0.010 edge 1.28
n01 1000 cov 0.010 edge 28.18
n01 1000 ncd 0.010 edge 8.58
n01 2000 cov 0.010 edge 868.92
n01 2000 ncd 0.010 edge 75.16
n01 4000 cov 0.010 edge 10499.69
n01 4000 ncd 0.010 edge 679.49
pro 500 cov 0.010 edge 5.36
pro 500 ncd 0.010 edge 2.34
pro 1000 cov 0.010 edge 462.85
pro 1000 ncd 0.010 edge 25.16
pro 2000 cov 0.010 edge 18684.76
pro 2000 ncd 0.010 edge 497.70
pro 4000 cov 0.010 edge 242289.78
pro 4000 ncd 0.010 edge 2954.54

Table 3 - raw data

method eng time nobs iter eps dim idim trKS logL conv dgap
1_cov_edge_pro_0.001_500_B3 covips cpp 0.31 102 2 0.001 1141 500 500 -16107.5 0 NA
1_ncd_edge_pro_0.001_500_B3 ncd cpp 2.00 102 139 0.001 1141 500 500 -16107.5 0 0
2_cov_edge_pro_0.001_500_B3 covips cpp 0.31 102 2 0.001 1125 500 500 -15748.6 0 NA
2_ncd_edge_pro_0.001_500_B3 ncd cpp 1.83 102 151 0.001 1125 500 500 -15748.6 0 0
3_cov_edge_pro_0.001_500_B3 covips cpp 0.31 102 2 0.001 1129 500 500 -15973.8 0 NA
3_ncd_edge_pro_0.001_500_B3 ncd cpp 1.86 102 137 0.001 1129 500 500 -15973.8 0 0
4_cov_edge_pro_0.001_500_B3 covips cpp 0.28 102 2 0.001 1131 500 500 -16697.2 0 NA
4_ncd_edge_pro_0.001_500_B3 ncd cpp 1.62 102 96 0.001 1131 500 500 -16697.2 0 0
5_cov_edge_pro_0.001_500_B3 covips cpp 0.37 102 2 0.001 1110 500 500 -16294.1 0 NA
5_ncd_edge_pro_0.001_500_B3 ncd cpp 2.00 102 141 0.001 1110 500 500 -16294.1 0 0
1_cov_edge_n01_0.001_500_B3 covips cpp 0.18 102 1 0.001 1141 500 500 -25189.6 0 NA
1_ncd_edge_n01_0.001_500_B3 ncd cpp 1.07 102 5 0.001 1141 500 500 -25189.6 0 0
2_cov_edge_n01_0.001_500_B3 covips cpp 0.13 102 1 0.001 1125 500 500 -25185.4 0 NA
2_ncd_edge_n01_0.001_500_B3 ncd cpp 0.97 102 5 0.001 1125 500 500 -25185.4 0 0
3_cov_edge_n01_0.001_500_B3 covips cpp 0.19 102 1 0.001 1129 500 500 -25158.9 0 NA
3_ncd_edge_n01_0.001_500_B3 ncd cpp 0.58 102 5 0.001 1129 500 500 -25158.9 0 0
4_cov_edge_n01_0.001_500_B3 covips cpp 0.20 102 1 0.001 1131 500 500 -25187.2 0 NA
4_ncd_edge_n01_0.001_500_B3 ncd cpp 1.01 102 5 0.001 1131 500 500 -25187.2 0 0
5_cov_edge_n01_0.001_500_B3 covips cpp 0.21 102 1 0.001 1110 500 500 -25198.2 0 NA
5_ncd_edge_n01_0.001_500_B3 ncd cpp 0.56 102 5 0.001 1110 500 500 -25198.2 0 0
1_cov_edge_pro_0.005_500_B3 covips cpp 0.98 102 9 0.001 1617 500 500 -10127.4 0 NA
1_ncd_edge_pro_0.005_500_B3 ncd cpp 1.62 102 61 0.001 1617 500 500 -10127.4 0 0
2_cov_edge_pro_0.005_500_B3 covips cpp 0.99 102 10 0.001 1615 500 500 -9686.2 0 NA
2_ncd_edge_pro_0.005_500_B3 ncd cpp 2.18 102 317 0.001 1615 500 500 -9686.2 0 0
3_cov_edge_pro_0.005_500_B3 covips cpp 3.17 102 19 0.001 1629 500 500 -9953.4 0 NA
3_ncd_edge_pro_0.005_500_B3 ncd cpp 1.11 102 94 0.001 1629 500 500 -9953.4 0 0
4_cov_edge_pro_0.005_500_B3 covips cpp 0.88 102 8 0.001 1617 500 500 -10458.6 0 NA
4_ncd_edge_pro_0.005_500_B3 ncd cpp 3.30 102 79 0.001 1617 500 500 -10458.6 0 0
5_cov_edge_pro_0.005_500_B3 covips cpp 1.77 102 14 0.001 1619 500 500 -10658.3 0 NA
5_ncd_edge_pro_0.005_500_B3 ncd cpp 1.40 102 83 0.001 1619 500 500 -10658.3 0 0
1_cov_edge_n01_0.005_500_B3 covips cpp 0.33 102 1 0.001 1617 500 500 -24939.6 0 NA
1_ncd_edge_n01_0.005_500_B3 ncd cpp 0.61 102 6 0.001 1617 500 500 -24939.6 0 0
2_cov_edge_n01_0.005_500_B3 covips cpp 0.32 102 1 0.001 1615 500 500 -24939.9 0 NA
2_ncd_edge_n01_0.005_500_B3 ncd cpp 1.46 102 6 0.001 1615 500 500 -24939.9 0 0
3_cov_edge_n01_0.005_500_B3 covips cpp 0.35 102 1 0.001 1629 500 500 -24906.0 0 NA
3_ncd_edge_n01_0.005_500_B3 ncd cpp 0.86 102 6 0.001 1629 500 500 -24906.0 0 0
4_cov_edge_n01_0.005_500_B3 covips cpp 0.42 102 1 0.001 1617 500 500 -24957.9 0 NA
4_ncd_edge_n01_0.005_500_B3 ncd cpp 0.98 102 6 0.001 1617 500 500 -24957.9 0 0
5_cov_edge_n01_0.005_500_B3 covips cpp 0.56 102 1 0.001 1619 500 500 -24936.4 0 NA
5_ncd_edge_n01_0.005_500_B3 ncd cpp 0.95 102 6 0.001 1619 500 500 -24936.4 0 0
1_cov_edge_pro_0.010_500_B3 covips cpp 4.81 102 21 0.001 2243 500 500 -6658.5 0 NA
1_ncd_edge_pro_0.010_500_B3 ncd cpp 2.06 102 78 0.001 2243 500 500 -6658.5 0 0
2_cov_edge_pro_0.010_500_B3 covips cpp 6.51 102 24 0.001 2208 500 500 -6288.4 0 NA
2_ncd_edge_pro_0.010_500_B3 ncd cpp 2.34 102 95 0.001 2208 500 500 -6288.4 0 0
3_cov_edge_pro_0.010_500_B3 covips cpp 4.23 102 18 0.001 2249 500 500 -6665.9 0 NA
3_ncd_edge_pro_0.010_500_B3 ncd cpp 1.44 102 75 0.001 2249 500 500 -6665.9 0 0
4_cov_edge_pro_0.010_500_B3 covips cpp 8.67 102 20 0.001 2264 500 500 -6920.1 0 NA
4_ncd_edge_pro_0.010_500_B3 ncd cpp 2.46 102 78 0.001 2264 500 500 -6920.1 0 0
5_cov_edge_pro_0.010_500_B3 covips cpp 5.36 102 22 0.001 2230 500 500 -6199.0 0 NA
5_ncd_edge_pro_0.010_500_B3 ncd cpp 2.44 102 107 0.001 2230 500 500 -6199.0 0 0
1_cov_edge_n01_0.010_500_B3 covips cpp 1.89 102 2 0.001 2243 500 500 -24601.8 0 NA
1_ncd_edge_n01_0.010_500_B3 ncd cpp 1.15 102 7 0.001 2243 500 500 -24601.8 0 0
2_cov_edge_n01_0.010_500_B3 covips cpp 0.86 102 1 0.001 2208 500 500 -24621.1 0 NA
2_ncd_edge_n01_0.010_500_B3 ncd cpp 1.25 102 7 0.001 2208 500 500 -24621.1 0 0
3_cov_edge_n01_0.010_500_B3 covips cpp 0.84 102 1 0.001 2249 500 500 -24615.3 0 NA
3_ncd_edge_n01_0.010_500_B3 ncd cpp 1.53 102 7 0.001 2249 500 500 -24615.3 0 0
4_cov_edge_n01_0.010_500_B3 covips cpp 0.59 102 1 0.001 2264 500 500 -24639.4 0 NA
4_ncd_edge_n01_0.010_500_B3 ncd cpp 1.31 102 7 0.001 2264 500 500 -24639.4 0 0
5_cov_edge_n01_0.010_500_B3 covips cpp 1.16 102 1 0.001 2230 500 500 -24616.7 0 NA
5_ncd_edge_n01_0.010_500_B3 ncd cpp 1.28 102 7 0.001 2230 500 500 -24616.7 0 0
1_cov_edge_pro_0.001_1000_B3 covips cpp 4.91 102 4 0.001 2474 1000 1000 -29174.2 0 NA
1_ncd_edge_pro_0.001_1000_B3 ncd cpp 20.10 102 320 0.001 2474 1000 1000 -29174.2 0 0
2_cov_edge_pro_0.001_1000_B3 covips cpp 8.62 102 4 0.001 2515 1000 1000 -28310.1 0 NA
2_ncd_edge_pro_0.001_1000_B3 ncd cpp 41.55 102 447 0.001 2515 1000 1000 -28310.1 0 0
3_cov_edge_pro_0.001_1000_B3 covips cpp 3.13 102 4 0.001 2504 1000 1000 -27807.4 0 NA
3_ncd_edge_pro_0.001_1000_B3 ncd cpp 12.34 102 177 0.001 2504 1000 1000 -27807.4 0 0
4_cov_edge_pro_0.001_1000_B3 covips cpp 2.98 102 4 0.001 2496 1000 1000 -29589.3 0 NA
4_ncd_edge_pro_0.001_1000_B3 ncd cpp 13.36 102 225 0.001 2496 1000 1000 -29589.3 0 0
5_cov_edge_pro_0.001_1000_B3 covips cpp 4.18 102 5 0.001 2526 1000 1000 -29133.4 0 NA
5_ncd_edge_pro_0.001_1000_B3 ncd cpp 8.09 102 155 0.001 2526 1000 1000 -29133.4 0 0
1_cov_edge_n01_0.001_1000_B3 covips cpp 0.96 102 1 0.001 2474 1000 1000 -50256.9 0 NA
1_ncd_edge_n01_0.001_1000_B3 ncd cpp 5.71 102 6 0.001 2474 1000 1000 -50256.9 0 0
2_cov_edge_n01_0.001_1000_B3 covips cpp 1.32 102 1 0.001 2515 1000 1000 -50217.0 0 NA
2_ncd_edge_n01_0.001_1000_B3 ncd cpp 3.92 102 6 0.001 2515 1000 1000 -50217.0 0 0
3_cov_edge_n01_0.001_1000_B3 covips cpp 1.21 102 1 0.001 2504 1000 1000 -50216.0 0 NA
3_ncd_edge_n01_0.001_1000_B3 ncd cpp 6.81 102 6 0.001 2504 1000 1000 -50216.0 0 0
4_cov_edge_n01_0.001_1000_B3 covips cpp 0.77 102 1 0.001 2496 1000 1000 -50217.9 0 NA
4_ncd_edge_n01_0.001_1000_B3 ncd cpp 4.47 102 6 0.001 2496 1000 1000 -50217.9 0 0
5_cov_edge_n01_0.001_1000_B3 covips cpp 0.90 102 1 0.001 2526 1000 1000 -50246.8 0 NA
5_ncd_edge_n01_0.001_1000_B3 ncd cpp 6.30 102 6 0.001 2526 1000 1000 -50246.8 0 0
1_cov_edge_pro_0.005_1000_B3 covips cpp 51.39 102 17 0.001 4458 1000 1000 -13360.9 0 NA
1_ncd_edge_pro_0.005_1000_B3 ncd cpp 15.94 102 276 0.001 4458 1000 1000 -13360.9 0 0
2_cov_edge_pro_0.005_1000_B3 covips cpp 46.28 102 17 0.001 4425 1000 1000 -14120.2 0 NA
2_ncd_edge_pro_0.005_1000_B3 ncd cpp 13.03 102 237 0.001 4425 1000 1000 -14120.2 0 0
3_cov_edge_pro_0.005_1000_B3 covips cpp 150.54 102 23 0.001 4490 1000 1000 -12345.0 0 NA
3_ncd_edge_pro_0.005_1000_B3 ncd cpp 3193.32 102 3259 0.001 4490 1000 1000 -12345.0 0 0
4_cov_edge_pro_0.005_1000_B3 covips cpp 100.14 102 24 0.001 4527 1000 1000 -13593.5 0 NA
4_ncd_edge_pro_0.005_1000_B3 ncd cpp 12.32 102 238 0.001 4527 1000 1000 -13593.5 0 0
5_cov_edge_pro_0.005_1000_B3 covips cpp 89.37 102 23 0.001 4521 1000 1000 -13485.7 0 NA
5_ncd_edge_pro_0.005_1000_B3 ncd cpp 18.92 102 202 0.001 4521 1000 1000 -13485.7 0 0
1_cov_edge_n01_0.005_1000_B3 covips cpp 2.15 102 1 0.001 4458 1000 1000 -49278.6 0 NA
1_ncd_edge_n01_0.005_1000_B3 ncd cpp 5.52 102 7 0.001 4458 1000 1000 -49278.6 0 0
2_cov_edge_n01_0.005_1000_B3 covips cpp 2.48 102 1 0.001 4425 1000 1000 -49265.2 0 NA
2_ncd_edge_n01_0.005_1000_B3 ncd cpp 5.96 102 7 0.001 4425 1000 1000 -49265.2 0 0
3_cov_edge_n01_0.005_1000_B3 covips cpp 2.40 102 1 0.001 4490 1000 1000 -49254.0 0 NA
3_ncd_edge_n01_0.005_1000_B3 ncd cpp 4.73 102 7 0.001 4490 1000 1000 -49254.0 0 0
4_cov_edge_n01_0.005_1000_B3 covips cpp 3.54 102 1 0.001 4527 1000 1000 -49218.5 0 NA
4_ncd_edge_n01_0.005_1000_B3 ncd cpp 7.71 102 7 0.001 4527 1000 1000 -49218.5 0 0
5_cov_edge_n01_0.005_1000_B3 covips cpp 3.77 102 1 0.001 4521 1000 1000 -49243.2 0 NA
5_ncd_edge_n01_0.005_1000_B3 ncd cpp 7.42 102 7 0.001 4521 1000 1000 -49243.2 0 0
1_cov_edge_pro_0.010_1000_B3 covips cpp 533.27 102 58 0.001 6978 1000 1000 -4104.6 0 NA
1_ncd_edge_pro_0.010_1000_B3 ncd cpp 27.57 102 189 0.001 6978 1000 1000 -4104.6 0 0
2_cov_edge_pro_0.010_1000_B3 covips cpp 212.08 102 46 0.001 6906 1000 1000 -5729.2 0 NA
2_ncd_edge_pro_0.010_1000_B3 ncd cpp 25.16 102 237 0.001 6906 1000 1000 -5729.2 0 0
3_cov_edge_pro_0.010_1000_B3 covips cpp 462.85 102 56 0.001 6977 1000 1000 -4347.6 0 NA
3_ncd_edge_pro_0.010_1000_B3 ncd cpp 30.83 102 236 0.001 6977 1000 1000 -4347.6 0 0
4_cov_edge_pro_0.010_1000_B3 covips cpp 337.03 102 52 0.001 7088 1000 1000 -4671.1 0 NA
4_ncd_edge_pro_0.010_1000_B3 ncd cpp 23.88 102 102 0.001 7088 1000 1000 -4671.1 0 0
5_cov_edge_pro_0.010_1000_B3 covips cpp 520.84 102 51 0.001 6956 1000 1000 -5648.4 0 NA
5_ncd_edge_pro_0.010_1000_B3 ncd cpp 15.05 102 77 0.001 6956 1000 1000 -5648.4 0 0
1_cov_edge_n01_0.010_1000_B3 covips cpp 31.80 102 2 0.001 6978 1000 1000 -47992.0 0 NA
1_ncd_edge_n01_0.010_1000_B3 ncd cpp 8.51 102 9 0.001 6978 1000 1000 -47992.0 0 0
2_cov_edge_n01_0.010_1000_B3 covips cpp 8.48 102 2 0.001 6906 1000 1000 -47921.9 0 NA
2_ncd_edge_n01_0.010_1000_B3 ncd cpp 8.58 102 9 0.001 6906 1000 1000 -47921.9 0 0
3_cov_edge_n01_0.010_1000_B3 covips cpp 14.19 102 2 0.001 6977 1000 1000 -47963.5 0 NA
3_ncd_edge_n01_0.010_1000_B3 ncd cpp 8.42 102 9 0.001 6977 1000 1000 -47963.5 0 0
4_cov_edge_n01_0.010_1000_B3 covips cpp 28.18 102 2 0.001 7088 1000 1000 -47899.9 0 NA
4_ncd_edge_n01_0.010_1000_B3 ncd cpp 10.87 102 9 0.001 7088 1000 1000 -47899.9 0 0
5_cov_edge_n01_0.010_1000_B3 covips cpp 37.96 102 2 0.001 6956 1000 1000 -47981.5 0 NA
5_ncd_edge_n01_0.010_1000_B3 ncd cpp 10.65 102 9 0.001 6956 1000 1000 -47981.5 0 0
1_cov_edge_pro_0.001_2000_B3 covips cpp 321.59 102 6 0.001 6006 2000 2000 -54824.6 0 NA
1_ncd_edge_pro_0.001_2000_B3 ncd cpp 153.21 102 327 0.001 6006 2000 2000 -54824.6 0 0
2_cov_edge_pro_0.001_2000_B3 covips cpp 313.99 102 6 0.001 6011 2000 2000 -54755.5 0 NA
2_ncd_edge_pro_0.001_2000_B3 ncd cpp 132.39 102 125 0.001 6011 2000 2000 -54755.5 0 0
3_cov_edge_pro_0.001_2000_B3 covips cpp 333.88 102 6 0.001 5951 2000 2000 -54542.3 0 NA
3_ncd_edge_pro_0.001_2000_B3 ncd cpp 149.14 102 161 0.001 5951 2000 2000 -54542.3 0 0
4_cov_edge_pro_0.001_2000_B3 covips cpp 335.78 102 6 0.001 5999 2000 2000 -55138.7 0 NA
4_ncd_edge_pro_0.001_2000_B3 ncd cpp 123.03 102 141 0.001 5999 2000 2000 -55138.7 0 0
5_cov_edge_pro_0.001_2000_B3 covips cpp 337.05 102 6 0.001 5999 2000 2000 -53310.8 0 NA
5_ncd_edge_pro_0.001_2000_B3 ncd cpp 167.90 102 290 0.001 5999 2000 2000 -53310.8 0 0
1_cov_edge_n01_0.001_2000_B3 covips cpp 33.95 102 1 0.001 6006 2000 2000 -99936.6 0 NA
1_ncd_edge_n01_0.001_2000_B3 ncd cpp 75.28 102 7 0.001 6006 2000 2000 -99936.6 0 0
2_cov_edge_n01_0.001_2000_B3 covips cpp 22.07 102 1 0.001 6011 2000 2000 -99975.7 0 NA
2_ncd_edge_n01_0.001_2000_B3 ncd cpp 60.44 102 7 0.001 6011 2000 2000 -99975.7 0 0
3_cov_edge_n01_0.001_2000_B3 covips cpp 16.37 102 1 0.001 5951 2000 2000 -100093.3 0 NA
3_ncd_edge_n01_0.001_2000_B3 ncd cpp 69.45 102 6 0.001 5951 2000 2000 -100093.3 0 0
4_cov_edge_n01_0.001_2000_B3 covips cpp 19.19 102 1 0.001 5999 2000 2000 -100011.0 0 NA
4_ncd_edge_n01_0.001_2000_B3 ncd cpp 62.78 102 6 0.001 5999 2000 2000 -100011.0 0 0
5_cov_edge_n01_0.001_2000_B3 covips cpp 35.89 102 1 0.001 5999 2000 2000 -99976.1 0 NA
5_ncd_edge_n01_0.001_2000_B3 ncd cpp 65.28 102 6 0.001 5999 2000 2000 -99976.1 0 0
1_cov_edge_pro_0.005_2000_B3 covips cpp 5673.76 102 43 0.001 14019 2000 2000 -19967.6 0 NA
1_ncd_edge_pro_0.005_2000_B3 ncd cpp 174.02 102 206 0.001 14019 2000 2000 -19967.6 0 0
2_cov_edge_pro_0.005_2000_B3 covips cpp 5209.17 102 39 0.001 13895 2000 2000 -20841.6 0 NA
2_ncd_edge_pro_0.005_2000_B3 ncd cpp 105.27 102 145 0.001 13895 2000 2000 -20841.6 0 0
3_cov_edge_pro_0.005_2000_B3 covips cpp 5330.66 102 39 0.001 13908 2000 2000 -19787.2 0 NA
3_ncd_edge_pro_0.005_2000_B3 ncd cpp 338.38 102 461 0.001 13908 2000 2000 -19787.2 0 0
4_cov_edge_pro_0.005_2000_B3 covips cpp 5653.85 102 43 0.001 14156 2000 2000 -18840.0 0 NA
4_ncd_edge_pro_0.005_2000_B3 ncd cpp 268.02 102 368 0.001 14156 2000 2000 -18840.0 0 0
5_cov_edge_pro_0.005_2000_B3 covips cpp 5290.88 102 40 0.001 13928 2000 2000 -21411.9 0 NA
5_ncd_edge_pro_0.005_2000_B3 ncd cpp 286.18 102 553 0.001 13928 2000 2000 -21411.9 0 0
1_cov_edge_n01_0.005_2000_B3 covips cpp 301.91 102 2 0.001 14019 2000 2000 -95849.1 0 NA
1_ncd_edge_n01_0.005_2000_B3 ncd cpp 72.35 102 10 0.001 14019 2000 2000 -95849.1 0 0
2_cov_edge_n01_0.005_2000_B3 covips cpp 224.55 102 2 0.001 13895 2000 2000 -95920.3 0 NA
2_ncd_edge_n01_0.005_2000_B3 ncd cpp 58.85 102 9 0.001 13895 2000 2000 -95920.3 0 0
3_cov_edge_n01_0.005_2000_B3 covips cpp 266.46 102 2 0.001 13908 2000 2000 -95981.8 0 NA
3_ncd_edge_n01_0.005_2000_B3 ncd cpp 61.57 102 9 0.001 13908 2000 2000 -95981.8 0 0
4_cov_edge_n01_0.005_2000_B3 covips cpp 201.57 102 2 0.001 14156 2000 2000 -95747.7 0 NA
4_ncd_edge_n01_0.005_2000_B3 ncd cpp 71.51 102 10 0.001 14156 2000 2000 -95747.7 0 0
5_cov_edge_n01_0.005_2000_B3 covips cpp 285.11 102 2 0.001 13928 2000 2000 -95973.8 0 NA
5_ncd_edge_n01_0.005_2000_B3 ncd cpp 78.51 102 9 0.001 13928 2000 2000 -95973.8 0 0
1_cov_edge_pro_0.010_2000_B3 covips cpp 17575.03 102 116 0.001 24079 2000 2000 -915.1 0 NA
1_ncd_edge_pro_0.010_2000_B3 ncd cpp 211.63 102 164 0.001 24079 2000 2000 -915.1 0 0
2_cov_edge_pro_0.010_2000_B3 covips cpp 18684.76 102 122 0.001 23987 2000 2000 -929.4 0 NA
2_ncd_edge_pro_0.010_2000_B3 ncd cpp 497.70 102 466 0.001 23987 2000 2000 -929.4 0 0
3_cov_edge_pro_0.010_2000_B3 covips cpp 18072.26 102 119 0.001 23900 2000 2000 -1233.0 0 NA
3_ncd_edge_pro_0.010_2000_B3 ncd cpp 635.88 102 453 0.001 23900 2000 2000 -1233.0 0 0
4_cov_edge_pro_0.010_2000_B3 covips cpp 19689.78 102 134 0.001 24072 2000 2000 -325.0 0 NA
4_ncd_edge_pro_0.010_2000_B3 ncd cpp 224.86 102 180 0.001 24072 2000 2000 -325.0 0 0
5_cov_edge_pro_0.010_2000_B3 covips cpp 19001.13 102 135 0.001 23675 2000 2000 -369.2 0 NA
5_ncd_edge_pro_0.010_2000_B3 ncd cpp 2530.77 102 1094 0.001 23675 2000 2000 -369.2 0 0
1_cov_edge_n01_0.010_2000_B3 covips cpp 887.35 102 2 0.001 24079 2000 2000 -90782.2 0 NA
1_ncd_edge_n01_0.010_2000_B3 ncd cpp 99.79 102 14 0.001 24079 2000 2000 -90782.2 0 0
2_cov_edge_n01_0.010_2000_B3 covips cpp 807.21 102 2 0.001 23987 2000 2000 -90761.7 0 NA
2_ncd_edge_n01_0.010_2000_B3 ncd cpp 73.60 102 13 0.001 23987 2000 2000 -90761.7 0 0
3_cov_edge_n01_0.010_2000_B3 covips cpp 874.95 102 2 0.001 23900 2000 2000 -90850.6 0 NA
3_ncd_edge_n01_0.010_2000_B3 ncd cpp 76.28 102 13 0.001 23900 2000 2000 -90850.6 0 0
4_cov_edge_n01_0.010_2000_B3 covips cpp 868.92 102 2 0.001 24072 2000 2000 -90686.8 0 NA
4_ncd_edge_n01_0.010_2000_B3 ncd cpp 69.65 102 13 0.001 24072 2000 2000 -90686.8 0 0
5_cov_edge_n01_0.010_2000_B3 covips cpp 829.17 102 2 0.001 23675 2000 2000 -90918.2 0 NA
5_ncd_edge_n01_0.010_2000_B3 ncd cpp 75.16 102 13 0.001 23675 2000 2000 -90918.2 0 0
1_cov_edge_pro_0.001_4000_B3 covips cpp 5907.12 102 11 0.001 16022 4000 4000 -92029.4 0 NA
1_ncd_edge_pro_0.001_4000_B3 ncd cpp 1307.36 102 402 0.001 16022 4000 4000 -92029.4 0 0
2_cov_edge_pro_0.001_4000_B3 covips cpp 5926.87 102 11 0.001 15955 4000 4000 -92130.0 0 NA
2_ncd_edge_pro_0.001_4000_B3 ncd cpp 778.18 102 115 0.001 15955 4000 4000 -92130.0 0 0
3_cov_edge_pro_0.001_4000_B3 covips cpp 5975.33 102 11 0.001 16005 4000 4000 -90454.4 0 NA
3_ncd_edge_pro_0.001_4000_B3 ncd cpp 1444.99 102 538 0.001 16005 4000 4000 -90454.4 0 0
4_cov_edge_pro_0.001_4000_B3 covips cpp 6307.31 102 12 0.001 16041 4000 4000 -89202.1 0 NA
4_ncd_edge_pro_0.001_4000_B3 ncd cpp 911.64 102 165 0.001 16041 4000 4000 -89202.1 0 0
5_cov_edge_pro_0.001_4000_B3 covips cpp 6380.10 102 12 0.001 15881 4000 4000 -92132.0 0 NA
5_ncd_edge_pro_0.001_4000_B3 ncd cpp 697.69 102 73 0.001 15881 4000 4000 -92132.0 0 0
1_cov_edge_n01_0.001_4000_B3 covips cpp 779.52 102 1 0.001 16022 4000 4000 -197709.0 0 NA
1_ncd_edge_n01_0.001_4000_B3 ncd cpp 554.11 102 8 0.001 16022 4000 4000 -197709.0 0 0
2_cov_edge_n01_0.001_4000_B3 covips cpp 791.66 102 1 0.001 15955 4000 4000 -197871.6 0 NA
2_ncd_edge_n01_0.001_4000_B3 ncd cpp 606.22 102 8 0.001 15955 4000 4000 -197871.6 0 0
3_cov_edge_n01_0.001_4000_B3 covips cpp 822.76 102 1 0.001 16005 4000 4000 -197933.7 0 NA
3_ncd_edge_n01_0.001_4000_B3 ncd cpp 612.21 102 8 0.001 16005 4000 4000 -197933.7 0 0
4_cov_edge_n01_0.001_4000_B3 covips cpp 781.68 102 1 0.001 16041 4000 4000 -197883.6 0 NA
4_ncd_edge_n01_0.001_4000_B3 ncd cpp 631.35 102 8 0.001 16041 4000 4000 -197883.6 0 0
5_cov_edge_n01_0.001_4000_B3 covips cpp 772.54 102 1 0.001 15881 4000 4000 -197956.8 0 NA
5_ncd_edge_n01_0.001_4000_B3 ncd cpp 638.29 102 8 0.001 15881 4000 4000 -197956.8 0 0
1_cov_edge_pro_0.005_4000_B3 covips cpp 76708.33 102 95 0.001 47963 4000 4000 -16309.4 0 NA
1_ncd_edge_pro_0.005_4000_B3 ncd cpp 1587.65 102 364 0.001 47963 4000 4000 -16309.4 0 0
2_cov_edge_pro_0.005_4000_B3 covips cpp 86047.67 102 100 0.001 47995 4000 4000 -16692.5 0 NA
2_ncd_edge_pro_0.005_4000_B3 ncd cpp 836.76 102 90 0.001 47995 4000 4000 -16692.5 0 0
3_cov_edge_pro_0.005_4000_B3 covips cpp 75499.72 102 97 0.001 47998 4000 4000 -16198.3 0 NA
3_ncd_edge_pro_0.005_4000_B3 ncd cpp 1141.17 102 189 0.001 47998 4000 4000 -16198.3 0 0
4_cov_edge_pro_0.005_4000_B3 covips cpp 74571.65 102 98 0.001 48222 4000 4000 -15674.7 0 NA
4_ncd_edge_pro_0.005_4000_B3 ncd cpp 1590.75 102 295 0.001 48222 4000 4000 -15674.7 0 0
5_cov_edge_pro_0.005_4000_B3 covips cpp 74520.17 102 96 0.001 47657 4000 4000 -16751.6 0 NA
5_ncd_edge_pro_0.005_4000_B3 ncd cpp 1208.90 102 225 0.001 47657 4000 4000 -16751.6 0 0
1_cov_edge_n01_0.005_4000_B3 covips cpp 3846.67 102 2 0.001 47963 4000 4000 -181334.3 0 NA
1_ncd_edge_n01_0.005_4000_B3 ncd cpp 567.33 102 14 0.001 47963 4000 4000 -181334.3 0 0
2_cov_edge_n01_0.005_4000_B3 covips cpp 3765.30 102 2 0.001 47995 4000 4000 -181538.6 0 NA
2_ncd_edge_n01_0.005_4000_B3 ncd cpp 409.19 102 14 0.001 47995 4000 4000 -181538.6 0 0
3_cov_edge_n01_0.005_4000_B3 covips cpp 5215.77 102 2 0.001 47998 4000 4000 -181582.9 0 NA
3_ncd_edge_n01_0.005_4000_B3 ncd cpp 597.36 102 14 0.001 47998 4000 4000 -181582.9 0 0
4_cov_edge_n01_0.005_4000_B3 covips cpp 5335.65 102 2 0.001 48222 4000 4000 -181420.9 0 NA
4_ncd_edge_n01_0.005_4000_B3 ncd cpp 631.56 102 15 0.001 48222 4000 4000 -181420.9 0 0
5_cov_edge_n01_0.005_4000_B3 covips cpp 5124.37 102 2 0.001 47657 4000 4000 -181505.5 0 NA
5_ncd_edge_n01_0.005_4000_B3 ncd cpp 578.23 102 15 0.001 47657 4000 4000 -181505.5 0 0
1_cov_edge_pro_0.010_4000_B3 covips cpp 240871.66 102 237 0.001 88041 4000 4000 33303.0 0 NA
1_ncd_edge_pro_0.010_4000_B3 ncd cpp 2276.68 102 261 0.001 88041 4000 4000 33303.0 0 0
2_cov_edge_pro_0.010_4000_B3 covips cpp 295253.35 102 281 0.001 87794 4000 4000 31484.3 0 NA
2_ncd_edge_pro_0.010_4000_B3 ncd cpp 11695.35 102 754 0.001 87794 4000 4000 31484.3 0 0
3_cov_edge_pro_0.010_4000_B3 covips cpp 230783.04 102 243 0.001 88215 4000 4000 33238.7 0 NA
3_ncd_edge_pro_0.010_4000_B3 ncd cpp 3786.91 102 423 0.001 88215 4000 4000 33238.7 0 0
4_cov_edge_pro_0.010_4000_B3 covips cpp 248280.30 102 239 0.001 87561 4000 4000 32523.6 0 NA
4_ncd_edge_pro_0.010_4000_B3 ncd cpp 2796.56 102 364 0.001 87561 4000 4000 32523.6 0 0
5_cov_edge_pro_0.010_4000_B3 covips cpp 242289.78 102 231 0.001 87124 4000 4000 31088.3 0 NA
5_ncd_edge_pro_0.010_4000_B3 ncd cpp 2954.54 102 435 0.001 87124 4000 4000 31088.3 0 0
1_cov_edge_n01_0.010_4000_B3 covips cpp 7429.60 102 3 0.001 88041 4000 4000 -160398.7 0 NA
1_ncd_edge_n01_0.010_4000_B3 ncd cpp 679.49 102 24 0.001 88041 4000 4000 -160398.7 0 0
2_cov_edge_n01_0.010_4000_B3 covips cpp 7764.50 102 3 0.001 87794 4000 4000 -160899.2 0 NA
2_ncd_edge_n01_0.010_4000_B3 ncd cpp 534.98 102 23 0.001 87794 4000 4000 -160899.2 0 0
3_cov_edge_n01_0.010_4000_B3 covips cpp 10499.69 102 3 0.001 88215 4000 4000 -160694.7 0 NA
3_ncd_edge_n01_0.010_4000_B3 ncd cpp 636.64 102 24 0.001 88215 4000 4000 -160694.7 0 0
4_cov_edge_n01_0.010_4000_B3 covips cpp 10830.43 102 3 0.001 87561 4000 4000 -160644.7 0 NA
4_ncd_edge_n01_0.010_4000_B3 ncd cpp 701.34 102 24 0.001 87561 4000 4000 -160644.7 0 0
5_cov_edge_n01_0.010_4000_B3 covips cpp 11271.12 102 3 0.001 87124 4000 4000 -161406.0 0 NA
5_ncd_edge_n01_0.010_4000_B3 ncd cpp 702.72 102 24 0.001 87124 4000 4000 -161406.0 0 0
1_cov_edge_pro_0.001_6000_B3 covips cpp 29972.92 102 19 0.001 30204 6000 6000 -111423.4 0 NA
1_ncd_edge_pro_0.001_6000_B3 ncd cpp 3958.58 102 524 0.001 30204 6000 6000 -111423.4 0 0
2_cov_edge_pro_0.001_6000_B3 covips cpp 27214.38 102 19 0.001 29985 6000 6000 -110488.8 0 NA
2_ncd_edge_pro_0.001_6000_B3 ncd cpp 2295.22 102 147 0.001 29985 6000 6000 -110488.8 0 0
3_cov_edge_pro_0.001_6000_B3 covips cpp 25748.96 102 18 0.001 30002 6000 6000 -112057.7 0 NA
3_ncd_edge_pro_0.001_6000_B3 ncd cpp 1761.33 102 81 0.001 30002 6000 6000 -112057.7 0 0
4_cov_edge_pro_0.001_6000_B3 covips cpp 23882.25 102 18 0.001 30111 6000 6000 -112023.9 0 NA
4_ncd_edge_pro_0.001_6000_B3 ncd cpp 2095.99 102 121 0.001 30111 6000 6000 -112023.9 0 0
5_cov_edge_pro_0.001_6000_B3 covips cpp 23944.50 102 18 0.001 29820 6000 6000 -113229.1 0 NA
5_ncd_edge_pro_0.001_6000_B3 ncd cpp 1900.10 102 138 0.001 29820 6000 6000 -113229.1 0 0
1_cov_edge_n01_0.001_6000_B3 covips cpp 2757.50 102 1 0.001 30204 6000 6000 -293457.5 0 NA
1_ncd_edge_n01_0.001_6000_B3 ncd cpp 1598.44 102 9 0.001 30204 6000 6000 -293457.5 0 0
2_cov_edge_n01_0.001_6000_B3 covips cpp 2943.04 102 1 0.001 29985 6000 6000 -293753.9 0 NA
2_ncd_edge_n01_0.001_6000_B3 ncd cpp 1544.97 102 9 0.001 29985 6000 6000 -293753.9 0 0
3_cov_edge_n01_0.001_6000_B3 covips cpp 3442.23 102 1 0.001 30002 6000 6000 -293573.0 0 NA
3_ncd_edge_n01_0.001_6000_B3 ncd cpp 1614.66 102 9 0.001 30002 6000 6000 -293573.0 0 0
4_cov_edge_n01_0.001_6000_B3 covips cpp 3364.09 102 1 0.001 30111 6000 6000 -293706.5 0 NA
4_ncd_edge_n01_0.001_6000_B3 ncd cpp 1620.96 102 9 0.001 30111 6000 6000 -293706.5 0 0
5_cov_edge_n01_0.001_6000_B3 covips cpp 3435.67 102 1 0.001 29820 6000 6000 -293752.2 0 NA
5_ncd_edge_n01_0.001_6000_B3 ncd cpp 1650.25 102 9 0.001 29820 6000 6000 -293752.2 0 0

Table 3 - graphics