Gene Ontology Label Discernment and Identification


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Documentation for package ‘goldi’ version 1.0.1

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enrichment Calculate enriched terms in a target set
goldi Identify terms present in document.
hgt Calculate the hypergeometric tail
make.lim Construct Constraint Limits for Fuzzy Identification
make.syn Construct synonym matrix for internal or external use
match Match terms
MF_terms Molecular Function terms A dataset of molecular function terms.
replaceExpressions Internal expression replacement with grep
replaceExpressions.character Internal expression replacement with grep
replaceExpressions.PlainTextDocument Internal expression replacement with grep
TDM.go.df Term document matrix of Gene Ontology Molecular Function terms