Measure Growth Patterns and Align Sampling Spots in Photographs


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Documentation for package ‘sclero’ version 0.2

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sclero-package Measure Growth Patterns and Align Sampling Spots in Photographs
assign.size Assign spot sizes to 'rawDist' objects for estimating spatial extent of sample averaging error.
assign.value Assign values to 'rawDist' objects for plotting.
barium Barium to calcium ratios for sample spots in shellspots dataset
coln Print the order and names of columns in a data frame
convert.ijdata Convert IJDATA object to a list of spatstat objects
create.rawDist Create rawDist data from arbitary coordinates
order.ijdata Order IJDATA spot sequences and growth lines
plot.rawDist Plot rawDist object
plot.spotDist Plot spotDist object
print.spotDist Print 'spotDist' objects
read.ijdata Read ImageJ zip file containing several ROI files and extract coordinate information.
samplemap Common plotting function for plot.rawDist and plot.spotDist functions
sclero Measure Growth Patterns and Align Sampling Spots in Photographs
shellsizes Coordinates of sample spots together with spot size information and growth lines along a bivalve mollusk shell section
shellspots Coordinates of sample spots and growth lines along a bivalve mollusk shell section
spot.dist Distance of sampling spots from margin along a measurement axis