Tools for Data Analyses in Biology

Documentation for package ‘statforbiology’ version 0.9.9

Help Pages

-- A --

AMMI	AMMI analysis for multienvironment genotype experiments
angularTransform	Angular transformation for percentages
anova.aovlist	Prints an ANOVA table for an 'aovList' object
asymReg.fun	Asymptotic functions

-- B --

beetGrowth	Growth of sugarbeet in weed-infested and weed-free conditions
beta.fun	Beta equation
biplot.AMMIobject	Biplots for AMMI and GGE analyses of multi-environment genotype experiments
biplot.GGEobject	Biplots for AMMI and GGE analyses of multi-environment genotype experiments
boxcox.nls	Transform-both-sides (TBS) method for nonlinear regression
bragg.3.fun	Bragg's Equation
bragg.4.fun	Bragg's Equation

-- C --

check.hom	Check linear models for homoscedasticity
compCoefs	Pairwise comparisons of model parameters for nls objects
compCurves	Compare regression curves in a pairwise fashion
contr.Tukey	Pairwise contrast matrix
cousens85.fun	Rectangular hyperbola for yield/weed density relationship
CVA	Canonical variate analysis for multienvironment and multitrait genotype experiments

-- D --

degradation	Soil degradation kinetic for a herbicide
deviance.drc	Residual deviance for a non-linear regression fit.
DRC.asymReg	Asymptotic functions
DRC.beta	Beta equation
DRC.bragg.3	Bragg's Equation
DRC.bragg.4	Bragg's Equation
DRC.cousens85	Rectangular hyperbola for yield/weed density relationship
DRC.E2	Modified Gompertz equations
DRC.E3	Modified Gompertz equations
DRC.E4	Modified Gompertz equations
DRC.expoDecay	Exponential decay function
DRC.expoGrowth	Exponential growth function
DRC.L2	Logistic equations
DRC.linear	Simple linear regression functions
DRC.logCurve	Logarithmic curve
DRC.lorentz.3	Lorentz equation
DRC.lorentz.4	Lorentz equation
DRC.negExp	Negative exponential functions
DRC.negExpDist	Negative exponential functions
DRC.poly2	Simple polynomial regression functions
DRC.powerCurve	Power curve equation
DRC.SSasymp	Asymptotic functions
DRC.YL	Yield loss equation (Rectangular hyperbola)

-- E --

E2.fun	Modified Gompertz equations
E3.fun	Modified Gompertz equations
E4.fun	Modified Gompertz equations
expoDecay.fun	Exponential decay function
expoGrowth.fun	Exponential growth function

-- G --

G2.fun	Gompertz equations
G3.fun	Gompertz equations
G4.fun	Gompertz equations
getAgroData	Get one of the available datasets
getPlotData	Get the data for plotting with ggplot()
getPlotData.drc	Get the data for plotting with ggplot()
getPlotData.drcte	Get the data for plotting with ggplot()
getPlotData.nls	Get the data for plotting with ggplot()
GGE	GGE analysis for multienvironment genotype experiments
gnlht	Linear/nonlinear contrasts of model parameters

-- L --

L2.fun	Logistic equations
L3.fun	Logistic equations
L4.fun	Logistic equations
linear.fun	Simple linear regression functions
LL2.fun	Log-logistic equation
LL3.fun	Log-logistic equation
LL4.fun	Log-logistic equation
logCurve.fun	Logarithmic curve
logCurveNI.fun	Logarithmic curve
lorentz.3.fun	Lorentz equation
lorentz.4.fun	Lorentz equation

-- M --

ma	Moving average for a vector
metamitron	Degradation of metamitron in soil with co-applied herbicides
mixture	Efficacy of the mixture of two herbicides

-- N --

negExp.fun	Negative exponential functions
negExpDist.fun	Negative exponential functions
NLS.asymReg	Asymptotic functions
NLS.beta	Beta equation
NLS.bragg.3	Bragg's Equation
NLS.bragg.4	Bragg's Equation
NLS.cousens85	Rectangular hyperbola for yield/weed density relationship
NLS.E2	Modified Gompertz equations
NLS.E3	Modified Gompertz equations
NLS.E4	Modified Gompertz equations
NLS.expoDecay	Exponential decay function
NLS.expoGrowth	Exponential growth function
NLS.G2	Gompertz equations
NLS.G3	Gompertz equations
NLS.G4	Gompertz equations
NLS.L2	Logistic equations
NLS.L3	Logistic equations
NLS.L4	Logistic equations
NLS.linear	Simple linear regression functions
NLS.linearOrigin	Simple linear regression functions
NLS.LL2	Log-logistic equation
NLS.LL3	Log-logistic equation
NLS.LL4	Log-logistic equation
NLS.logCurve	Logarithmic curve
NLS.logCurveNI	Logarithmic curve
NLS.lorentz.3	Lorentz equation
NLS.lorentz.4	Lorentz equation
NLS.negExp	Negative exponential functions
NLS.negExpDist	Negative exponential functions
NLS.poly2	Simple polynomial regression functions
NLS.powerCurve	Power curve equation
NLS.W1.2	Weibull equation (Type I)
NLS.W1.3	Weibull equation (Type I)
NLS.W1.4	Weibull equation (Type I)
NLS.W2.2	Weibull equation (Type II)
NLS.W2.3	Weibull equation (Type II)
NLS.W2.4	Weibull equation (Type II)
NLS.YL	Yield loss equation (Rectangular hyperbola)

-- P --

pairComp	Pairwise comparisons between the numeric elements of a vector
plotnls	Plotting diagnostics for an 'nls' object
poly2.fun	Simple polynomial regression functions
powerCurve.fun	Power curve equation

-- R --

Goodness of fit for nonlinear regression

-- S --

SSbeta	Beta equation
SSbragg	Bragg's Equation
SScousens85	Rectangular hyperbola for yield/weed density relationship
SSE	Modified Gompertz equations
SSGompertz	Gompertz equations
SSL	Logistic equations
SSLL	Log-logistic equation
SSlorentz	Lorentz equation
SSpowerCurve	Power curve equation
SSW1	Weibull equation (Type I)
SSW2	Weibull equation (Type II)
SSYL	Yield loss equation (Rectangular hyperbola)
summary.nlsbc	Transform-both-sides (TBS) method for nonlinear regression

-- W --

-- Y --

Yield loss equation (Rectangular hyperbola)