aa_cdr3_dist |
Average frequency of nucleotide mutations resulting in amino acid substitution in CDR3 |
aa_dist |
Average frequency of nucleotide mutations resulting in amino acid substitution in FRs and CDRs |
aa_plot |
Plot of average frequency of nucleotide mutations resulting in amino acid substitution |
gene_comb_funk |
gene/gene ratios of two gene families |
gene_comb_plot |
Plot of gene/gene ratios of two gene families |
germlineReconstr |
Function to reconstruction of germline sequencies based on IMGT outputs. |
IMGTtab1 |
IMGT Table 1 |
IMGTtab2 |
IMGT Table 2 |
IMGTtab7 |
IMGT Table 7 |
IMGTtab8 |
IMGT Table 8 |
Klassen |
Klassen |
lengthCDR3 |
Frequency distribution of the CDR3 length |
na_funktion |
The function to check for reconsrtruction errors |
nucleotide_mutation |
The frequencies of nucleotide mutations and the frequencies of transition and transversion |
targetingMatrix |
Function to the calculation of the number of Nucleotids at three positions before and after a mutation |
targeting_motiv |
Function to calculate the difference at three positions before and after a mutation to identify the hotspot motifs |
targeting_motive_plot |
Polt of the difference at three positions before and after a mutation to identify the hotspot motifs. |