Read, Plot and Analyse Output from the DEPONS Model

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Documentation for package ‘DEPONS2R’ version 1.2.6

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ais.to.DeponsShips Convert ship tracks to DeponsShips object
aisdata Position for three ships in the inner Danish waters
as.data.frame-method Convert DeponsDyn object to data frame
as.data.frame-method Convert DeponsTrack to data frame
bathymetry Bathymetry of the Kattegat area
bbox Get bbox from Depons* object
bbox-method Get bbox from Depons* object
calib_01 Plot distribution of turning angles, step lengths and speed of tracked simulated porpoises.
check.DeponsShips Check if ships move at unrealistic speeds or are outside the map boundary
coastline Coastline of Northern Europe
crs Get or set map projection in Depons* objects
crs-method Get or set map projection in Depons* objects
crs<- Get or set map projection in Depons* objects
crs<--method Get or set map projection in Depons* objects
DEPONS2R Package for analyzing DEPONS simulation output
DeponsBlockdyn-class DeponsBlockdyn-class
DeponsDyn-class DeponsDyn-class
DeponsRaster-class DeponsRaster-class
DeponsShips-class DeponsShips-class
DeponsTrack-class DeponsTrack-class
dyn Extract population dynamics from objects
dyn-method Extract population dynamics from objects
get.latest.sim Get name of newest file
get.simtime Get simulation date
interpolate.ais.data Interpolate AIS data
landscape Get or set the landscape name
landscape-method Get or set the landscape name
landscape<- Get or set the landscape name
landscape<--method Get or set the landscape name
make.blocksraster Makes new file with blocks
make.blocksraster-method Makes new file with blocks
make.clip.poly Make clipping polygon from bbox
make.clip.poly-method Make clipping polygon from bbox
make.DeponsDyn Make DeponsDyn object from data stored in data frame
make.stationary.ships Identify and parameterize stationary active ships in a DeponsShips object
make.windfarms Make wind farm construction scenario
plot-method Plot a DeponsBlockdyn object
plot-method Plot a DeponsDyn object
plot-method Plot a DeponsRaster object
plot-method Plot a DeponsShips object
plot-method Plot a DeponsTrack object
plot.DeponsBlockdyn Plot a DeponsBlockdyn object
plot.DeponsDyn Plot a DeponsDyn object
plot.DeponsRaster Plot a DeponsRaster object
plot.DeponsShips Plot a DeponsShips object
plot.DeponsTrack Plot a DeponsTrack object
porpoisebdyn Simulated porpoise population dynamics
porpoisedyn Simulated porpoise population dynamics
porpoisetrack Simulated porpoise track
read.DeponsBlockdyn Reading simulated population count for blocks
read.DeponsDyn Reading DEPONS simulation output
read.DeponsDynBatch Read and merges DEPONS Batchmap and Statistics Files
read.DeponsParam Read simulation parameters
read.DeponsRaster Reading DEPONS raster files
read.DeponsShips Read DEPONS ship files
read.DeponsTrack Reading DEPONS track files
read.DeponsTrackBatch Read and Process DEPONS Batchmap and Statistics Files
routes Get or define routes in DeponsShips objects
routes-method Get or define routes in DeponsShips objects
routes<- Get or define routes in DeponsShips objects
routes<--method Get or define routes in DeponsShips objects
shipdata Ships on example routes through the Kattegat
ships Get or define ships in DeponsShips objects
ships-method Get or define ships in DeponsShips objects
ships<- Get or define ships in DeponsShips objects
ships<--method Get or define ships in DeponsShips objects
startday Get or set start date for simulation
startday-method Get or set start date for simulation
startday<- Get or set start date for simulation
startday<--method Get or set start date for simulation
summary Summary
summary-method Summary
Summary-methods Summary
tick.to.time Convert tick number to time object
time.to.tick Convert date to tick number
title Get or set the title of Depons* objects
title-method Get or set the title of Depons* objects
title<- Get or set the title of Depons* objects
title<--method Get or set the title of Depons* objects
write-method Write DEPONS ship files
write.DeponsShips Write DEPONS ship files