| E |
E |
| eco |
eco |
| eco.alfreq |
Allelic frequency histograms for an ecogen genetic data frame |
| eco.association |
Chi-square and Fisher's exact test for association of loci and alleles with a factor |
| eco.bearing |
Angular Spatial Weights |
| eco.cbind |
Combining ecogen objects by column |
| eco.clear |
Clearing the working environment, maintaining only the specified objects |
| eco.convert |
Conversion utility for genetic data |
| eco.cormantel |
Mantel and partial Mantel correlograms, omnidirectional and directional |
| eco.correlog |
Moran's I, Geary's C and bivariate Moran's I correlograms, omnidirectional and directional |
| eco.detrend |
Detrending spatial data with polynomial interpolation |
| eco.dom_af |
Compute allele frequencies for dominant data using different methods |
| eco.fill_ecogen_with_df |
Importation of data frames to ecogen |
| eco.fill_ecogen_with_ecopop |
Importation of ecopop to ecogen |
| eco.forestplot |
Forestplot graphs |
| eco.forestplot-method |
Forestplot graphs |
| eco.format |
Format tool for genetic data |
| eco.formula |
Formula construction for ecogen objects |
| eco.gsa |
Global spatial analysis |
| eco.kin.hardy |
Kinship and relationship estimation for dominant markers |
| eco.kin.loiselle |
Obtention of the multilocus Loiselle's Fij matrix |
| eco.lagweight |
Obtention of a list of spatial weights for classes defined by inter-individual distances or nearest-neighbors |
| eco.listw2ew |
Conversion from listw to ecoweight |
| eco.lmtree |
Fitting Multiple Linear Regression models by stepwise AIC selection and Multiple Classification and Regression Trees via party |
| eco.lock,ecogen |
Lock rows in an ecogen object |
| eco.lock,ecopop |
Lock rows in an ecogen object |
| eco.lock-method |
Lock rows in an ecogen object |
| eco.lock-method |
Lock rows in an ecogen object |
| eco.lsa |
Local spatial analysis |
| eco.malecot |
Global and local kinship analysis |
| eco.mantel |
Mantel and partial Mantel tests, with truncation option |
| eco.merge |
Merging two ecogen objects. Ordering the rows of an ecogen object according to the rows of another |
| eco.NDVI |
Generation of atmospherically corrected NDVI and MSAVI2 images for temporal series of Landsat 5 and 7 |
| eco.NDVI.post |
Postprocessing for NDVI and MSAVI2 temporal series of Landsat 5 and 7 |
| eco.nei_dist |
Estimate Nei distance matrix |
| eco.old2new,ecogen |
Update an old ecogen or ecopop object to version >= 1.5.0-1 |
| eco.old2new,ecopop |
Update an old ecogen or ecopop object to a version compatible with EcoGenetics >= 1.5.0-1 |
| eco.old2new-method |
Update an old ecogen or ecopop object to version >= 1.5.0-1 |
| eco.old2new-method |
Update an old ecogen or ecopop object to a version compatible with EcoGenetics >= 1.5.0-1 |
| eco.order |
Functions deprecated in EcoGenetics version 1.2.0-2 |
| eco.pairtest |
Kruskall - Wallis + Wilcoxon (Mann-Whitney U) and aov + Tukey-HSD tests for an ecogen object |
| eco.plotCorrelog |
eco.plotCorrelog |
| eco.plotCorrelogB |
eco.plotCorrelogB |
| eco.plotGlobal |
GSA plot methods |
| eco.plotLocal |
eco.plotLocal |
| eco.plotWeight |
Plot for a connection network |
| eco.post.geneland |
Log posterior probability plot for Geneland repetitions with fixed K |
| eco.rankplot |
Rankplot graphs |
| eco.rankplot-method |
Rankplot graphs |
| eco.rasterplot |
Rasterplot graphs |
| eco.rasterplot-method |
rasterplot graph for eco.lsa results |
| eco.rbind |
Combining ecogen objects by row |
| eco.remove |
Creating an updated ecogen object by removing results of the slot OUT |
| eco.slide.con |
Sliding a window along a connection network |
| eco.slide.matrix |
Sliding window for matrix data |
| eco.split |
Splitting an ecogen object by group |
| eco.subset |
Subsetting an ecogen object by group |
| eco.theilsen |
Theil-sen regression for a raster time series, with parallelization available |
| eco.unlock,ecogen |
Unlock rows in an ecogen object |
| eco.unlock,ecopop |
Unlock rows in an ecogen object |
| eco.unlock-method |
Unlock rows in an ecogen object |
| eco.unlock-method |
Unlock rows in an ecogen object |
| eco.variogram |
Empirical variogram |
| eco.weight |
Spatial weights |
| eco2 |
eco2 |
| eco3 |
eco3 |
| eco4 |
eco4 |
| ecogen |
Creating a new ecogen object |
| ecogen2ecopop |
Conversion form ecogen to ecopop |
| ecogen2geneland |
Creating input data for Geneland with an ecogen object |
| ecogen2genepop |
Exporting an ecogen genetic data frame into Genepop format |
| ecogen2genind |
Conversion form ecogen to genind and genind to ecogen |
| ecogen2gstudio |
Conversion from ecogen to gstudio and gstudio to ecogen |
| ecogen2hierfstat |
Converting an ecogen genetic data frame into a hierfstat data frame |
| ecogen2spagedi |
Exporting an ecogen genetic data frame into SPAGeDi format |
| EcoGenetics |
Management and Exploratory Analysis of Spatial Data in Landscape Genetics |
| ecogenetics_devel |
EcoGenetic devel site |
| ecogenetics_tutorial |
EcoGenetic tutorial site |
| ecopop |
Creating a new ecopop object |
| ecopop2genpop |
Conversion form ecopop to genpop and genpop to ecopop |
| ecopop_counts2af |
ecopop_counts2af |
| eco_dom |
eco_dom |
| environment |
environment |
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