A geometrical Approach to Differential expression and gene-set
enrichment
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Documentation for package ‘GeoDE’ version 1.0
Help Pages
| GeoDE-package | Differential Expression and Enrichment Analysis with (Geo)metrical(D)ifferential(E)expression. |
| AllGMTfiles | The gmt files included in GeoDE |
| chdirAnalysis | A Function to Perform Characteristic Direction Analysis. |
| example_expression_data | Example Expression Data |
| example_gammas | Example Gamma Value |
| example_sampleclass | Example Sample Class Factor |
| GeoDE | Differential Expression and Enrichment Analysis with (Geo)metrical(D)ifferential(E)expression. |
| gmt | The currently loaded gmtfile |
| multigmtPAEAAnalysis | A Function to Evaluate Gene-Set Enrichment Using PAEA Over Multiple GMT Files. |
| PAEAAnalysis | A Function to Evaluate Gene-Set Enrichment Using PAEA. |