Functions for the Analysis of IBD Haplo Output


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Documentation for package ‘IBDhaploRtools’ version 1.8

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IBDhaploRtools-package Functions for the Analysis of IBD Haplo output
cumul.sum cumulative.sums
get.counts get counts
h.to.g Convert haplotype states to genotype states
ibdhap.barplot create ibd barplot
ibdhap.compare.loci ibdhap compare.loci
ibdhap.compare.segs ibdhap compare segments
ibdhap.make.calls ibdhap.make.calls
ibdhap.make.true ibdhap make true states
ibdhap.names Get chromosome names
ibdhap.reduce.states ibdhap reduce states
ibdhap.seg.lengths ibdhap.seg.lengths
ibdhap.summary.calls ibdhap summary of called states
ibdhap.transitions create transition matrix
IBDhaploRtools Functions for the Analysis of IBD Haplo output
ids_phased Example MORGAN IBDhaplo output
ids_unphased Example MORGAN IBDhaplo output
make.col.vec make color vector
meet.cutoff meet cutoff
posvec Example MORGAN IBDhaplo output
qibd_phased Example MORGAN IBDhaplo output
qibd_unphased Example MORGAN IBDhaplo output
removezeros remove zeros
return.ibd.val return ibd value
sumcol sum over specific columns
trueibd_phased Example MORGAN IBDhaplo output