Spiked Eigenvalue Test for Pathway data

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Documentation for package ‘SETPath’ version 1.0

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SETPath-package Spiked Eigenvalue Test for Pathway data
d1 Example data for the SETPath method - dataset from class 1
d2 Example data for the SETPath method - dataset from class 2
pathwaygenes Defines the gene memberships of the pathways in the example dataset
pathwaynames Names of the pathways used in the example.
SETPath Spiked Eigenvalue Test for Pathway data
setpath Runs the Spiked Eigenvalue Test for Pathway data (SETPath) on data from a single pathway
setpath.data Example data for the SETPath method
setpath.wrapper Runs the Spiked Eigenvalue Test for Pathway data (SETPath) on multiple pathways in a dataset
unbias.eigens Unbiased estimation of leading eigenvalues