Spatial Convex Clustering

Documentation for package ‘SpaCCr’ version 0.1.0

CNVPlotSeriesMeans	Plot subjects' copy number data with cluster means overlayed for a single chromosome
GetClusters	Compute Clusters from fusions
GetGammaCV	Get optimal cross validated gamma values by various rules
GetParBlocks	Function to compute blocks for parallization; should not be called directly
hello	Hello, World!
methy	A subset of methylation data for 50 subjects
MethyRegionPlot	Plots methylation data by Genomic Coordinates for a given chromosomal region with cluster means overlayed for each subject.
PlotCV	A function for plotting cross validation errors
SpaCC	Base function for computing SpaCC solution for single regularization value.
SpaCC_CV	Perform Cross Validation to select gamma/sparsity level
SpaCC_Methy	Performs Spatial Convex Clustering for methylation data
SpaCC_Missing	Solve Spatial Convex Clustering problem for missing data
SpaCC_Path	Solve Spatial Convex Clustering problem for path of regularization parameters
SpaCC_Path_Parallel	Solve Spatial Convex Clustering problem for path of regularization parameters in parallel
ThreshV	Threshold differences