Topic Inference to Identify Tissue Architecture in Multiplexed Images


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Documentation for package ‘SpaTopic’ version 1.2.0

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SpaTopic-package SpaTopic: Spatial Topic Modeling for Multiplexed Images
lung5 Example input data for 'SpaTopic'
print.SpaTopic Print method for SpaTopic objects
Seurat5obj_to_SpaTopic Convert a Seurat v5 object as the input of 'SpaTopic'
SpaTopic SpaTopic: Spatial Topic Modeling for Multiplexed Images
SpaTopic-class A class of the output from 'SpaTopic'
SpaTopic-Package SpaTopic: Spatial Topic Modeling for Multiplexed Images
SpaTopic_inference 'SpaTopic': fast topic inference to identify tissue architecture in multiplexed images
spatopic_message Format messages for SpaTopic package
stratified_sampling_sf Spatially stratified random sample points from an image.