cgdsr-package | CGDS-R : a library for accessing data in the MSKCC Cancer Genomics Data Server (CGDS). |
CGDS | Construct a CGDS connection object |
cgdsr | CGDS-R : a library for accessing data in the MSKCC Cancer Genomics Data Server (CGDS). |
cgdsr-CGDS | Construct a CGDS connection object |
cgdsr-getCancerStudies | Get available cancer studies available in CGDS |
cgdsr-getCaseLists | Get available case lists for a specific cancer study |
cgdsr-getClinicalData | Get clinical data for cancer study |
cgdsr-getGeneticProfiles | Get available genetic data profiles for a specific cancer study |
cgdsr-getMutationData | Get mutation data for cancer study |
cgdsr-getProfileData | Retrieves genomic profile data for genes and genetic profiles. |
cgdsr-plot | Generic plot function for CGDS API data. |
cgdsr-processURL | Internal methods for CGDS library. |
cgdsr-setPlotErrorMsg | Set custom plot error message |
cgdsr-setVerbose | Set verbose logging level for CGDS function calls |
cgdsr-test | Simple test suite for CGDS object. |
getCancerStudies | Get available cancer studies available in CGDS |
getCancerStudies.CGDS | Get available cancer studies available in CGDS |
getCaseLists | Get available case lists for a specific cancer study |
getCaseLists.CGDS | Get available case lists for a specific cancer study |
getClinicalData | Get clinical data for cancer study |
getClinicalData.CGDS | Get clinical data for cancer study |
getGeneticProfiles | Get available genetic data profiles for a specific cancer study |
getGeneticProfiles.CGDS | Get available genetic data profiles for a specific cancer study |
getMutationData | Get mutation data for cancer study |
getMutationData.CGDS | Get mutation data for cancer study |
getProfileData | Retrieves genomic profile data for genes and genetic profiles. |
getProfileData.CGDS | Retrieves genomic profile data for genes and genetic profiles. |
plot | Generic plot function for CGDS API data. |
plot.CGDS | Generic plot function for CGDS API data. |
processURL | Internal methods for CGDS library. |
processURL.CGDS | Internal methods for CGDS library. |
setPlotErrorMsg | Set custom plot error message |
setPlotErrorMsg.CGDS | Set custom plot error message |
setVerbose | Set verbose logging level for CGDS function calls |
setVerbose.CGDS | Set verbose logging level for CGDS function calls |
test | Simple test suite for CGDS object. |
test.CGDS | Simple test suite for CGDS object. |