State-Space Mass-Balance Model for Marine Ecosystems


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Documentation for package ‘ecostate’ version 0.2.0

Help Pages

abm3pc_sys Adams-Bashford-Moulton for system of equations
add_equilibrium Compute equilibrium values
compute_nll Compute negative log-likelihood for EcoState model
compute_tracer Calculate tracers, e.g., trophic level
dBdt Dynamics from EcoSim
ddirmult Dirichlet-multinomial
eastern_bering_sea eastern Bering Sea ecosystem data
ecostate fit EcoState model
ecostate_control Detailed control for ecostate structure
ginv Penrose-Moore pseudoinverse
logLik.ecostate Marginal log-likelihood
ode23 Non-stiff (and stiff) ODE solvers
plot_foodweb Plot foodweb
print.ecostate Print fitted ecostate object
print_ecopars Print EcoSim parameters
rk4sys Classical Runge-Kutta for system of equations
stanza_settings Detailed control for stanza structure
whitehouse_2021 Full rpath inputs for eastern Bering Sea