| arrayAppend |
Append two arrays by adding new data to top array |
| BayesAB |
Estimte SNP Effects by MCMC - Bayes (A and B) - beta |
| BayesCpi |
Estimte SNP Effects by MCMC - Bayes C and Cpi - beta |
| GetHCS |
Check SNP genotypes and exclude redundant SNPs |
| getMAF |
Return frequency of the minor allele of a SNP |
| is.hwEq |
Check a SNP for Hardy-Weinberg equilibrium |
| is.identical |
Check two SNPs for near identity across genotyped samples |
| read.findhap |
Read the output of Paul Vanraden's findhap, 'genotypes.filled' |
| snpRecode |
Recode a matrix of SNP genotypes as 0, 1, and 2 |
| snpSelect |
Select genotyped individuals and SNPs based on call rate, heterozygosity, HW equilibrium, or minor allele frequency. |
| toArray |
Turn Illumina's Genome Studio 'Final Report' file into an array |
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