| fasterqDump |
Download or convert fastq data from NCBI Sequence Read Archive using multiple threads |
| fastqDump |
Download or convert fastq data from NCBI Sequence Read Archive in a single thread (Windows compatible) |
| listEntities |
Get a list of entities (i.e. tables) available to query |
| listExpeditions |
Get a list of expeditions for a GEOME project |
| listLoci |
Get a list of loci that are stored in FASTA format directly in GEOME (not in the SRA) |
| listProjects |
Get a list of projects in GEOME |
| prefetch |
Download data from NCBI Sequence Read Archive in .sra format using FASP or HTTPS protocols |
| queryMetadata |
Query metadata from the GEOME database. |
| querySanger |
Query Sanger sequences directly from the GEOME database |
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