Bayesian Fractional Polynomials for GLMs


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Documentation for package ‘glmBfp’ version 0.0-60

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glmBfp-package Bayesian inference for fractional polynomial models from the GLM and Cox family
as.data.frame.GlmBayesMfp Convert a GlmBayesMfp object into a data frame
bfp Mark a covariate for transformation with fractional polynomials
computeModels Compute model information for a given list of model configurations and glmBayesMfp output.
convert2Mcmc Convert samples to mcmc objects
coxTBF Fit Cox models using glmBayesMfp
CustomGPrior Constructor for the custom g-prior class
CustomGPrior-class The custom g-prior class
empiricalHpd Construct an empirical HPD interval from samples
Extract.GlmBayesMfp Extract method for GlmBayesMfp objects
fpTrans Transform formula variables
GlmBayesMfp Bayesian model inference for fractional polynomial GLMs and Cox models
glmBayesMfp Bayesian model inference for fractional polynomial GLMs and Cox models
GlmBayesMfpSamples-subsetting Subset method for GlmBayesMfpSamples objects
glmBfp Bayesian inference for fractional polynomial models from the GLM and Cox family
HypergPrior Constructor for the hyper-g prior class
HypergPrior-class The hyper-g prior class
IncInvGammaGPrior Constructor for the incomplete inverse gamma g-prior class
IncInvGammaGPrior-class The incomplete inverse gamma g-prior class
inclusionProbs Compute posterior inclusion probabilites based on GlmBayesMfp object
InvGammaGPrior Constructor for the inverse gamma g-prior class
InvGammaGPrior-class The inverse gamma g-prior class
logMargLiks Extract the log marginal likelihood estimates from a GlmBayesMfp object
logPriors Extract the log prior values from a GlmBayesMfp object
McmcOptions Constructor for class McmcOptions
plotCurveEstimate Function for plotting a fractional polynomial curve estimate
posteriors Extract posterior model probability estimates from a GlmBayesMfp object
predict.TBFcox Prediction methods for CoxTBF objects
predict.TBFcox.BMA Prediction methods for CoxTBF objects for BMA models
predict.TBFcox.sep Prediction methods for CoxTBF objects with separate estimates
print.GlmBayesMfp Print a GlmBayesMfp object.
sampleBma Produce posterior samples from a Bayesian model average over GLMs / Cox models
sampleGlm Produce posterior samples from one GLM / Cox model
sampleSize Compute the number of samples for a given MCMC options triple
scrHpd Calculate an SCB from a samples matrix
uc Mark a covariate for transformation with fractional polynomials
[-method Subset method for GlmBayesMfpSamples objects
[.GlmBayesMfp Extract method for GlmBayesMfp objects