Global Gene-Set Analysis for Association Studies.

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Documentation for package ‘globalGSA’ version 1.0

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globalGSA-package Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
ans1 Global Adaptive Rank Truncated Product method.
ans11 Global Adaptive Rank Truncated Product method.
ans2 Global Fisher combination method.
ans21 Global Fisher combination method.
ans3 Global Simes' combination method.
ans31 Global Simes' combination method.
Codadd Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
Codcodom Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
Coddom Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
Codrec Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
CreateFormula Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
data Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
EstimatePvalue Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
ff Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
GeneratePvalues Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
gene_list Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
globalARTP Global Adaptive Rank Truncated Product method.
globalFisher Global Fisher combination method.
globalGSA Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
globalSimes Global Simes' combination method.
pvalFmla Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
runPermut Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
runPvalues Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
Selected_genes Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
Trunkpoint Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.