icmstate-package |
icmstate |
ageqb |
Check if event time is larger/equal than other event time |
agreaterb |
Check if event time is larger than other event time |
ainB |
Check if event time is contained within half-open interval |
Aintersectb |
Check if half-open intervals intersect with event times |
Alargerb |
Check if closed interval is contained in half-open infinite interval |
AsubsetB |
Check if closed interval is contained in other closed interval |
direct_from_observed_intervals |
Translate observed transition intervals into direct transition intervals |
estimate_support_msm |
Estimate the support of a general Markov interval-censored Multi-state model without loops. |
evalstep |
Sample from a markov chain multi state model with exactly observed transition times |
get_trans_intervals |
Get transition intervals from specified data |
graphfromIntervals |
Construct Graph from censoring/truncation intervals |
icmstate |
icmstate |
interpol_msfit |
Given a 'msfit' object, linearly interpolate the cumulative hazard taking into account the support sets for 'msfit' objects. |
msm_frydman |
Determine NPMLE for Multi State illness death Markov model using Frydman (1995) |
npmsm |
NPMLE for general multi-state model with interval censored transitions |
plot.npmsm |
Plot a "npmsm" object |
plot_probtrans |
Plot the transition probabilities for a fitted 'npmsm' model |
plot_surv |
Plot the transition specific survival probabilities for a fitted 'npmsm' model |
print.npmsm |
Print a "npmsm" object |
probtrans_weib |
Determine transition probabilities for a multi-state model with Weibull hazards for the transitions. |
prod_lambda_G_base |
Calculate the product of intensities over interval decided by failure times |
remove_redundant_observations |
Remove redundant observations from supplied data frame |
sim_id_weib |
Simulate panel data from an illness-death model with Weibull transition hazards |
sim_weibmsm |
Simulate multiple trajectories from an interval-censored multi-state model with Weibull transition intensities |
supportHudgens |
Determine the support of the NPMLE for interval censored data. |
support_from_direct_intervals |
Estimate support of multiple transitions given direct transition intervals |
support_npmsm |
Numerically find the support of the transitions from a converged npmsm algorithm |
transprob |
Wrapper for the 'probtrans' function |
transprob.msfit |
Wrapper for the 'probtrans' function |
transprob.msm |
Wrapper for the 'probtrans' function |
transprob.npmsm |
Wrapper for the 'probtrans' function |
visualise_data |
Visualise data for illness-death model, only applicable to Frydman(1995) setting. |
visualise_msm |
Visualise multi-state data |