methods for analyzing introgression between divergent lineages
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Documentation for package ‘introgress’ version 1.2.3
Help Pages
| introgress-package | introgress |
| AdmixDataSim1 | Admixed Population Genotype Data from Simulation 1 |
| AdmixDataSim2 | Admixed Population Genotype Data from Simulation 2 |
| AdmixDom | Admixed Population Dominant Genotype Data from Simulation 1 |
| calc.intersp.het | Calculate Interspecific Heterozygosity |
| clines.plot | Clines Plot |
| compare.clines | Compare Clines |
| composite.clines | Composite Clines Plot |
| delta | Delta |
| est.h | Estimate Hybrid Index |
| fit.c.clines | Fit Co-dominant Clines |
| fit.invariant.clines | Fit Invariant Clines |
| fixup.combos.touse | Fix Combos To Use |
| genomic.clines | Genomic Clines |
| h.func | Hybrid Index Function |
| like.h | Likelihood Hybrid Index |
| LociD | Dominant Marker Information for Simulation 1 |
| LociDataSim1 | Marker Information for Simulation 1 |
| LociDataSim2 | Marker Information for Simulation 2 |
| mk.image | Make Image |
| p1D | Parental Population 1 Dominant Genotype Data from Simulation 1 |
| p1DataSim2 | Parental Population 1 Dominant Genotype Data from Simulation 2 |
| p2D | Parental Population 2 Dominant Genotype Data from Simulation 1 |
| p2DataSim2 | Parental Population 2 Genotype Data from Simulation 2 |
| per.locus.like | Per Locus Likelihood |
| prepare.data | Prepare Data |
| s.wrapper | Sign Wrapper |
| support.limit | Support Limit |
| test.combinations | Test Combinations |
| test.data.objects | Test Data Objects |
| test.genotypes | Test Genotypes |
| triangle.plot | Triangle Plot |