Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis


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Documentation for package ‘lmem.qtler’ version 0.1.1

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DHpop_geno Name of the file containing genotypic (marker scores) information.
DHpop_map Name of the file containing genotypic (marker scores) information.
DHpop_pheno Name of the file containing genotypic (marker scores) information.
mq.diagnostics Performs molecular markers quality diagnostics.
pq.diagnostics Performs phenotypic data quality diagnostics.
qtl.analysis Performs a balanced population QTL mapping analysis.
qtl.cross Read genomic data to perform QTL analyses.
qtl.memq Performs Multi-Environment (or Multi-Trait) Multi-QTL analysis for balanced populations.
SxMxE_pheno Name of the file containing phenotypic information.
SxM_geno Name of the file containing genotypic (marker scores) information.
SxM_map Name of the file containing genotypic (marker scores) information.
SxM_pheno Name of the file containing phenotypic information.