Multi-Locus Haplotype Phasing


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Documentation for package ‘mlPhaser’ version 0.01

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mlPhaser-package mlPhaser
getHaploGroupProb Get haplotype group probability
getValidHaploGroups Get haplo groups for a genotype
listGenoToTable Genotype list to genotype table
listHaploToTable Haplotype list to Haplotype table.
listValidHaplotypes List valid haplotypes
phaseReport Best/all hapltype groups for a genotype
printHaploGroups Print haplotype groups
printHaploProbs Print haplo group probabilities
recurseHaplos Recurse to get haplo groups
reduceRedundantList Remove redundant haplotype groups
remGeno Extract haplotype from genotype
simGenoFromHaplo Simulate genotypes
tableGenoToList Convert genotype table to list of lists
tableHaploToList Haplotype table to haplotype list
testHaploInGeno Test genotype for presence of haplotype