Characterizing and Filtering Species Occurrence Data


[Up] [Top]

Documentation for package ‘occTest’ version 0.1.1

Help Pages

.addmainfields2 Add main fields
.ah2sp Convert Alpha Hull object into a shapefile
.cc_round_occTest Flag records with regular pattern interval
.check.geospatial.data Checks on the projection of the spatial data
.checkdatastr2 Check data structure
.checkfields Checking main fields
.checkPolygonsGEOS2 Check polygon geometry
.coords2country Extracts country ISO3 based on locations
.getSRTM Download SRTM elevation raster
.status.tracker.and.escaping Workflow status tracker
ctryToIso3 Convert country names to ISO3 codes
defaultSettings load default settings for occTest
geoEnvAccuracy Coordinate accuracy
get_occTest_settings Get occTest Settings
landSeaFilter Filter occurrence by habitat (terrestrial/non-Terrestrial)
lazylogic a lazy logic omitting NAs
minimalSettings Load minimal settings for occTest
occFilter Filter occurrence records from occTest outputs
occSimpFilter Runs tests and validates data
occTest Occurrence tests
plot.occTest Display the filtering process
rm.all Remove all objects
setTableNames set table names internally
setTestBlocks Set the tests to run
setTestTypes Set the tests to run
showTableNames Print naming conventions in occTest
showTests Show implemented tests and types of tests
splitSpname Split joined species name