Phylogenetic Assembly with Soft Taxonomic Inferences


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Documentation for package ‘pastis’ version 0.1-2

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pastis-package Phylogenetic Assembly with Soft Taxonomic Inferences.
accipitridaeBasicPastis Accipitridae basic data
accipitridaeFullPastis Accipitridae full data
conch mrBayes output interrogator (COnstraint CHecker)
default_output_template A sample output template for pastis_main and pastis_simple
pastis Phylogenetic Assembly with Soft Taxonomic Inferences.
pastis_data_1 Example data 1
pastis_data_2 Example data 2
pastis_data_3 Example data 3
pastis_data_3_trees Example output
pastis_main Phylogenetic Assembly with Soft Taxonomic Inferences
pastis_simple A simplified interface to the main pastis function.
read_input Called by create_job to read input files