Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web


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Documentation for package ‘rsnps’ version 0.6.0

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rsnps-package Get SNP (Single-Nucleotide Polymorphism) Data on the Web
allgensnp Get openSNP genotype data for all users at a particular snp.
allphenotypes Get all openSNP phenotypes, their variations, and how many users have data available for a given phenotype.
annotations Get all openSNP phenotypes, their variations, and how many users have data available for a given phenotype.
download_users Download openSNP user files.
fetch_genotypes Download openSNP genotype data for a user
genotypes Get openSNP genotype data for one or multiple users.
get_frequency Internal function to get the frequency of the variants from different studies.
get_gene_names Internal function to get gene names.
get_placements Internal function to get the position, alleles, assembly, hgvs notation
ncbi_snp_query Query NCBI's refSNP for information on a set of SNPs via the API
phenotypes Get openSNP phenotype data for one or multiple users.
phenotypes_byid Get all openSNP known variations and all users sharing that phenotype for one phenotype(-ID).
read_users Read in openSNP user files from local storage.
release_bullets For use with usethis::use_release_issue()
rsnps Get SNP (Single-Nucleotide Polymorphism) Data on the Web
rsnps-defunct Defunct functions in rsnps
users Get openSNP users.