Interface to Data from the SAFE Project


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Documentation for package ‘safedata’ version 1.1.3

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&.safe_record_set Validates dataset record ids from user input
add_locations Adds location data to a SAFE data worksheet.
add_taxa Add a taxonomic hierarchy to a SAFE data worksheet.
download_safe_files Download SAFE dataset files
get_file_details Get file details for a record
get_locations Obtaining locations for a SAFE dataset.
get_phylogeny Getting a phylogeny for a dataset
get_taxa Obtaining taxonomy for a SAFE dataset.
get_taxon_coverage Retrieve the current taxon index
get_taxon_graph Get a graph of the taxa in a dataset
igraph_to_phylo Getting a phylogeny for a dataset
insert_dataset Inserts local copies of files from a dataset into a SAFE data directory
load_gazetteer Load and cache the SAFE gazetteer
load_safe_data Loads data from a SAFE dataset.
print.safedata Loads data from a SAFE dataset.
print.safe_record_set Validates dataset record ids from user input
safedata Finding and using data from the SAFE Project.
safedata_network Network resources and the safedata package.
safe_record_set Validates dataset record ids from user input
search_authors SAFE dataset search functions.
search_dates SAFE dataset search functions.
search_fields SAFE dataset search functions.
search_safe SAFE dataset search functions.
search_spatial SAFE dataset search functions.
search_taxa SAFE dataset search functions.
search_text SAFE dataset search functions.
set_example_safe_dir Functions to use an example data directory for package examples
set_safe_dir Set the local SAFE data directory
show_concepts Show SAFE dataset metadata
show_record Show SAFE dataset metadata
show_worksheet Show SAFE dataset metadata
str.safedata Loads data from a SAFE dataset.
unset_example_safe_dir Functions to use an example data directory for package examples
validate_record_ids Validates dataset record ids from user input
|.safe_record_set Validates dataset record ids from user input