Simulation and visualization of restriction enzyme cutting pattern from DNA sequences.

Documentation for package ‘seqRFLP’ version 1.0.1

seqRFLP-package	Simulation and visualization of Restriction Fragment Length Polymorphism(RFLP) pattern from DNA sequences
as.fasta	Coerce "phy" or "nex" objects to fasta format.
clipprobe	Finding the sequences that could be clipped given two primers.
ConvFas	Convert files to fasta format
dataframe2fas	Convert dataframe to fasta format
enzCut	Restriction enzyme cutting pattern
enzdata	The restriction enzyme datasets.
fil.fas	Fasta data example.
fil.nxs	Internal nexus data.
fil.phy	Internal phylip format data
file.cat	Copy or concatenate files to one.
findprobe	Find probes matching sites
frag.dat	Reports for simulated RFLP cutting pattern
gnames.fas	Get the names of sequences from fasta objects.
plotenz	Plotting the simulated RFLP or TRFLP pattern
raw2Fas	Read and converting raw DNA files to fasta format.
read.fasta	Read fasta file
read.nxs	Read nexus file
read.phy	Read phylip file
rename.fas	Change the sequence names of fasta objects.
revComp	Reverse complement sequence
selEnz	Selecting restriction enzyme
seqRFLP	Simulation and visualization of Restriction Fragment Length Polymorphism(RFLP) pattern from DNA sequences
write.fasta	Write fasta format object to file