Striped Smith-Waterman Algorithm for Sequence Alignment using SIMD


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Documentation for package ‘ssw’ version 0.2.1

Help Pages

align Perform Smith-Waterman alignment of a read against a reference sequence
force_align Perform forced alignment with increased gap open penalty
formatter Format and pretty-print SSW forced alignment results without truncation
install_ssw_py Install ssw-py and its dependencies
is_installed_ssw_py Is ssw-py installed?
print.ssw Print SSW alignment results
ssw_py Global reference to ssw-py