Easily Access timsTOF Data
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Documentation for package ‘timsr’ version 0.0.3
Help Pages
| cleanMem | Clean memory. |
| download_bruker_proprietary_code | Get Bruker's code needed for running proprietary time of flight to mass over charge and scan to drift time conversion. |
| intensity_per_frame | Get sum of intensity per each frame (retention time). |
| min_max_measurements | Get border values for measurements. |
| MS1 | Get MS1 frame numbers. |
| peaks_per_frame_cnts | Get the number of peaks per frame. |
| plot_TIC | Plot intensity per retention time. |
| query | Query for raw data. |
| retention_times | Get the retention time for each frame. |
| rt_query | Get the retention time for each frame. |
| setup_bruker_so | Dynamically link Bruker's DLL to enable tof-mz and scan-inv_ion_mobility conversion. |
| table2dt | Extract tables from sqlite database analysis.tdf. |
| tables_names | Extract tables from sqlite database analysis.tdf. |
| tdf.tables | Explore the contentents of the sqlite .tdf database. |
| TimsR | Get TimsR data accessor. |
| TimsR-class | Advanced TimsTOF data accessor. |
| [-method | Get some frames of data. |
| [-method | Get some frames of data. |