Compare Gene Expressions from 2-Treatment RNA-Seq Experiments

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Documentation for package ‘AMAP.Seq’ version 1.0

• DESCRIPTION file.

Help Pages

map-package	Internal functions/data for AMAP.Seq package
counts	Internal functions/data for AMAP.Seq package
decom.initial	Internal functions/data for AMAP.Seq package
del.true	Internal functions/data for AMAP.Seq package
dispersion.nb.QL	Internal functions/data for AMAP.Seq package
dispersion.nb.shrink	Internal functions/data for AMAP.Seq package
dist.CvM2D	Internal functions/data for AMAP.Seq package
est.mu.nb.mle	Internal functions/data for AMAP.Seq package
est.v.nb.QL	Internal functions/data for AMAP.Seq package
EXP.part.nbinom	Internal functions/data for AMAP.Seq package
EXP.part.poisson	Internal functions/data for AMAP.Seq package
EXP.step	Internal functions/data for AMAP.Seq package
initial.uv	Internal functions/data for AMAP.Seq package
int.nbinom.prior	Internal functions/data for AMAP.Seq package
LogSum	Internal functions/data for AMAP.Seq package
MAX.step	Internal functions/data for AMAP.Seq package
MGN.EM	Estimate the mixture gamma-normal (MGN) distribution using expectation-maximization (EM) algorithm
nb.lglk	Internal functions/data for AMAP.Seq package
Norm.GMedian	Internal functions/data for AMAP.Seq package
pdf2cdf	Internal functions/data for AMAP.Seq package
pdf2grid	Internal functions/data for AMAP.Seq package
posterior.uv	Internal functions/data for AMAP.Seq package
posterior.uv.one	Internal functions/data for AMAP.Seq package
prior.est	Internal functions/data for AMAP.Seq package
prior.grid	Internal functions/data for AMAP.Seq package
RNASeq.Data	Standardize the data from RNA-seq experiment
RNASeq.Data.Gene	Internal functions/data for AMAP.Seq package
test.AMAP	Calculate the test statistics of the AMAP tests
test.amap.as	Internal functions/data for AMAP.Seq package
test.amap.gene	Internal functions/data for AMAP.Seq package