Comprehensive Batch Effect Diagnostics and Harmonization


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Documentation for package ‘ComBatFamQC’ version 1.0.4

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.biweight_midvar Biweight Midvariance Calculation
adni Harmonization Data
age_df Age Trajectory Data
age_list_gen Age Trend Estimates Generation
age_save Export Brain ROI Age Trends
age_shiny Lifespan Age Trends
age_table_gen Generate Age Trend Summary Table
age_trend_plot Generate Age Trend Plot
combat_harm ComBatFamily Harmonization
combat_plot_gen Generate Diagnostic Plots for Batch Effect Analysis
combat_table_gen Generate Diagnostic Tables for Batch Effect Analysis
comfam ComBat Family Harmonization
comfam_shiny Batch Effect Interactive Visualization
covfam CovBat Family Harmonization
customize_percentile Generate Predicted Quantiles for Age Trends
cus_result_gen Generate Customized Predicted Quantiles List
data_prep Data Preparation
diag_save Export Batch Effect Diagnosis Results
eb_check EB Assumption Check
form_gen ComBatFamily Model Formula Generations
getQuantileRefactored Compute Quantile Functions for a Predictor in a GAMLSS Model
interaction_gen Interaction Term Generation
model_gen Model Generations
predict.comfam Apply Harmonization to New Data
residual_gen Post Harmonization Residual Generation
visual_prep Batch Effect Diagnostic Visualization Preparation