Model-Based Clustering for RNA-seq Data

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Documentation for package ‘MBCluster.Seq’ version 1.0

• DESCRIPTION file.

Help Pages

cl.mb	Internal function for MBCluster.Seq package
cl.mb.est.MC	Internal function for MBCluster.Seq package
cl.mb.est.mc	Internal function for MBCluster.Seq package
cl.mb.est.P	Internal function for MBCluster.Seq package
cl.nb.est.c	Internal function for MBCluster.Seq package
cl.nb.est.m	Internal function for MBCluster.Seq package
cl.nb.est.mc	Internal function for MBCluster.Seq package
cl.ps.est.mc	Internal function for MBCluster.Seq package
Cluster.RNASeq	Do clustering for count data based on poisson or negative-binomial model
Count	Sample of Count Data
dst.euclidean.pair	Internal function for MBCluster.Seq package
dst.KL	Internal function for MBCluster.Seq package
dst.maximum.pair	Internal function for MBCluster.Seq package
dst.pairs	Internal function for MBCluster.Seq package
dst.pearson.pair	Internal function for MBCluster.Seq package
dst.Ward	Internal function for MBCluster.Seq package
dst2center.pairs	Internal function for MBCluster.Seq package
est.nb.mu.mle.one	Internal function for MBCluster.Seq package
est.nb.v.QL	Internal function for MBCluster.Seq package
est.nb.v.QL.one	Internal function for MBCluster.Seq package
Hybrid.Tree	Do hybrid-hierarchical clustering for RNA-seq data
Hybrid.Tree.Microarray	Internal function for MBCluster.Seq package
in.tree	Internal function for MBCluster.Seq package
KmeansPlus.RNASeq	Initialize the cluster centroids by a model-based Kmeans++ algorithm
leaf.color	Internal function for MBCluster.Seq package
lglk.cluster	Internal function for MBCluster.Seq package
lglk.cluster.one	Internal function for MBCluster.Seq package
lglk.nb	Internal function for MBCluster.Seq package
lglk.nb.1c	Internal function for MBCluster.Seq package
lglk.nb.c	Internal function for MBCluster.Seq package
lglk.ps	Internal function for MBCluster.Seq package
lglk.ps.1c	Internal function for MBCluster.Seq package
lglk.ps.c	Internal function for MBCluster.Seq package
loc.node	Internal function for MBCluster.Seq package
maxRow	Internal function for MBCluster.Seq package
MBCluster.Seq.Internal	Internal function for MBCluster.Seq package
meanCol	Internal function for MBCluster.Seq package
meanRow	Internal function for MBCluster.Seq package
MI.1	Internal function for MBCluster.Seq package
MI.2	Internal function for MBCluster.Seq package
MI.Cluster.Annotation	Internal function for MBCluster.Seq package
MI.score	Internal function for MBCluster.Seq package
MI.score.one	Internal function for MBCluster.Seq package
minRow	Internal function for MBCluster.Seq package
move.two	Internal function for MBCluster.Seq package
NMI.score	Internal function for MBCluster.Seq package
plotbr	Internal function for MBCluster.Seq package
plotHybrid.Tree	Plot the tree structure of the hybrid-hierarchical clustering results.
RNASeq.Data	Standardize RNASeq Data for Clustering
sortNode	Internal function for MBCluster.Seq package
sumCol	Internal function for MBCluster.Seq package
sumRow	Internal function for MBCluster.Seq package
tree.K	Internal function for MBCluster.Seq package